Table 1.
MiRNA and isomiR expression resources. All of them are accessible as online databases except the human cellular microRNAome, which is both an R package and a track at UCSC Genome Browser
| Resource | Number of miRNA-seq datasets | Number of organisms | Summary of features | IsomiR data | Last release date |
|---|---|---|---|---|---|
| Deepbase | 21 235 | 1 (Human) | Integration of different ncRNA profiles | No | 2021 |
| SEAweb | >42 00 | 10 | Also provides pathogen information | No | 2020 |
| microRNAome package | 2 077 | 1 (Human) | Manually curated cell types | No | 2022 |
| miRNATissueAtlas | 188 | 2 (Human and mouse) | 188 tissue samples from 6 individuals | No | 2022 |
| DIANA-miTED | 15 183 | 1 (Human) | Manually curated tissues | No | 2022 |
| IsomiR Bank | 2 727 | 8 | IsomiR target prediction and enrichment analysis | Yes | 2016 |
| Tumor IsomiR Encyclopedia | 11 667 | 1 (Human) | IsomiRs from TCGA | Yes | 2021 |
| isomiRdb | 42 499 | 1 (Human) | Largest compilation of isomiRs | Yes | 2022 |