Table 2.
Details of SNPs and lncRNAs for multiple species in lncRNASNP v3
| Species | lncRNA-SNP | SNP affected lncRNA structure | SNP affected MLPa | lncRNA expression | lncRNA diseases |
|---|---|---|---|---|---|
| Homo sapiens | 62 374 572 | 8 959 447 | 18 571 275/17 053 141 | 102 970 | 127 528 |
| Pan troglodytes | 5579 | 927 | 649/630 | NA | NA |
| Mus musculus | 4 353 914 | 677 302 | 1 069 549/988 382 | 130 051 | 1874 |
| Rattus norvegicus | 29 624 | 5 253 | 4 320/4 101 | 24 855 | 111 |
| Sus scrofa | 52 898 | 10 722 | 5 220/4 556 | NA | NA |
| Gallus gallus | 439 | 68 | 86/88 | 11 942 | NA |
| Danio rerio | 26 655 | 4 382 | 835/753 | 4 827 | NA |
| Drosophila melanogaster | 670 104 | 124 102 | 40 802/37 151 | 42 537 | NA |
aMLP represents the miRNA−lncRNA target pair, and variants (SNPs, TCGA mutations, CosmicNCVs) in lncRNAs induce potential MLP loss/gain.