Table 2.

UpSet chart example table

	List description	How to generate that list	Which filter to use	Question
Figure 5A	List of active ligands for a target of interest	Link on target details page	Target	What compounds will activate my target, and not some others I want to distinguish between?
Figure 5B	All targets	Go to target list page	NIH target lists	Which targets left the IDG list in 2022?
Figure 5C	All targets	Go to target list page	Data source	Which targets are in the Pro-Kino database, but not Dark Kinase Knowledgebase?
Figure 5D	Any target list	Generate an interesting target list—see Materials and Methods	PANTHER class/DTO class	Which of these targets is involved in RNA binding, but no DNA binding?

A table of examples of interesting questions that can be addressed through the use and interpretation of the UpSet charts in Pharos.

The columns provide a description of the list, a brief description of how to generate such a list, the filter to construct the UpSet plot for, and the question that can be addressed by it.

Images in Figure 5 show the corresponding UpSet plot for these examples.