Table 1.
PATRIC | IRD/ViPR | BV-BRC | |
---|---|---|---|
Data types | |||
Domains and motifs | No | Yes | Yes |
Epitopes | No | Yes | Yes |
Protein structures | No | Yes | Yes |
Surveillance and serology | No | Yes | Yes |
Services | |||
Assembly (de novo) | Yes | No | Yes |
SARS-Cov-2 assembly and annotation | No | No | Yes |
SARS-CoV-2 variant tracking | No | No | Yes |
Similar genome finder | Yes | No | Yes |
Meta-CATS | No | Yes | Yes |
Whole genome alignment | Yes | No | Yes |
Primer design | No | Yes | Yes |
Gene tree (user-selected genes/proteins) | No | Yes | Yes |
Proteome comparison | Yes | No | Yes |
Taxonomic classification | Yes | No | Yes |
Metagenomic binning | Yes | No | Yes |
RNA-Seq analysis | Yes | No | Yes |
Fastq utilities | Yes | No | Yes |
Command line interface | Yes | No | Yes |