Table 1.
Data summary of G4Atlas database
| Species | Experimental methods | Treatment | References |
|---|---|---|---|
| H. sapiens | rG4-seq | Li+, K+, K+-PDS | (7) |
| M. musculus (mESC) | NAI probing | vivo, vitro (0 mM K+), vitro (150 mM K+) | (10) |
| M. musculus (mESC) | DMS probing | vivo (PDS), vivo, vitro (0 mM K+), vitro (150 mM K+), vitro (95 degree), untreat (Na+), untreat (Li+), untreat (K+) | |
| Synechococcus (WH8102) | DMS probing | vitro (0 mM K+), vitro (150 mM K+), untreat (Na+), untreat (K+) | |
| P. putida | DMS probing | vivo, vitro (0 mM K+), vitro (150 mM K+), untreat (Na+), untreat (K+) | |
| E. coli | DMS probing | vivo, vitro (0 mM K+), vitro (150 mM K+), untreat (Na+), untreat (K+) | |
| S. cerevisiae | DMS probing | vivo, vitro (0 mM K+), vitro (150 mM K+), untreat (Na+), untreat (K+) | |
| H. sapiens (Hela) | RT-stop profiling | untreat (Na+), untreat (K+) | |
| H. sapiens (HEK293T) | RT-stop profiling | untreat (Na+), untreat (K+) | |
| H. sapiens | G4RP-seq | RHPS4, BRACO, NoRX, RHPS4_BioTASQ, BRACO_BioTASQ, NoRX_BioTASQ | (11) |
| H. sapiens (Hela) | rG4-seq | Li-250 ng, K-250 ng, Li-50 ng, K-50 ng | (35) |
| P. aeruginosa | rG4-seq | Li+, K+ | (41) |
| E. coli | rG4-seq | Li+, K+ | |
| M. musculus | Keth-seq | Kethoxal (1 min), Kethoxal (2.5 min), Kethoxal (5 min), Kethoxal (10 min), Kethoxal-remove, No treat, Kethoxal | (37) |
| M. musculus (mESC) | Keth-seq | No treat (vivo), No treat (vitro), Kethoxal (vivo), Kethoxal (vitro) | |
| H. sapiens | Keth-seq | No treat (vitro), kethxoal (in vitro), no treat (PDS, in vitro), kethxoal (PDS, in vitro) | |
| H. sapiens (Hela) | Keth-seq | No treat, Kethoxal, No-treat.PDS, Kethoxal.PDS | |
| A. thaliana | SHALiPE-seq | vivo, vitro (K+), vitro (Li+) | (6) |
| A. thaliana | rG4-seq | Li+, K+, K+-PDS | |
| O. sativa ssp. japonica | SHALiPE-Seq | vivo, vitro (K+), vitro (Li+) | |
| P. falciparum | rG4-seq | Li+, K+, K+-PDS | (42) |