Antibodies
|
|
|
Anti-Ubiquitin (clone Ubi-1) |
MilliporeSigma |
Cat#MAB1510-I |
Anti-Mouse IgG, HRP conjugate |
MilliporeSigma |
Cat#12–349 |
Anti-Legionella |
Scrum |
Cat#17457 |
Anti-Legionella |
BioAcademia |
Cat#64–100 |
Anti-HA |
MBL |
Cat#561 |
Anti-VCP |
Abcam |
Cat#ab11433 |
Anti-Rabbit IgG, Alexa488 conjugate |
Invitrogen |
Cat#A11034 |
Anti-Rat IgG, Alexa 568 conjugate |
Invitrogen |
Cat#A11077 |
Anti-Mouse IgG, Alexa488 conjugate |
Invitrogen |
Cat#A11029 |
Anti-Rabbit IgG, RhodamineRedX conjugate |
Invitrogen |
Cat#R6394 |
Bacterial strains
|
See Table S1 for a full list of bacterial strains |
|
|
Chemicals and recombinant proteins
|
ATTO488-maleimide |
ATTO-TEC |
Cat#AD488 |
K27 diUb |
UbiQ |
Cat#UbiQ-015 |
K11 tetraUb |
R&D Systems |
Cat#UC-45–025 |
Deposited data
|
Crystal structure of LotAN
|
This study |
PDB: 7UYG |
Crystal structure of LotAN bound to K6 diUb |
This study |
PDB: 7UYH |
Experimental models: Cell lines
|
Human: HeLa-FcγRII |
Laboratory of K. Arasaki |
Ref59
|
Mouse: Bone marrow-derived macrophages |
A/J mice |
Ref60
|
Oligonucleotides
|
See Table S1 for a full list of oligonucleotides |
|
|
Recombinant DNA
|
See Table S1 for a full list of recombinant DNA |
|
|
Software and algorithms
|
XDS |
Ref61
|
Version Jan 31, 2020 |
CCP4i2 |
Ref62
|
Version 7.1.004 |
Aimless |
Ref63
|
Version 0.7.4 |
SHELXC/D/E |
Ref64
|
|
ARP/wARP |
Ref65
|
Version 8.0 |
Phaser |
Ref66
|
Version 2.8.3 |
PHENIX |
Ref67
|
Version 1.17.1 |
Coot |
Ref68
|
Version 0.9 |
Pymol |
www.pymol.org
|
Version 2.2.2 |
Prism |
GraphPad |
Version 9 |