Skip to main content
. 2022 Dec 13;26(1):105806. doi: 10.1016/j.isci.2022.105806
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
γH2AX Merck Cat# PC130; RRID:AB_2238184
53BP1 Novus Biologicals Cat# NB100-304, RRID:AB_10003037
BRCA1 Santa Cruz Cat# sc-6954, RRID:AB_626761
RPA Millipore Cat# MABE285, RRID:AB_11205561
CDK substrate Cell Signaling Technology Cat# 9477, RRID:AB_2714143
CDK pY15 Cell Signaling Technology Cat# 9111, RRID:AB_331460
CDK1 Cell Signaling Technology Cat# 77055, RRID:AB_2716331
Actin Millipore Cat# MAB1501, RRID:AB_2223041
HRP anti-mouse Vector Laboratories Cat# PI-2000, RRID:AB_2336177
HRP anti-rabbit Vector Laboratories Cat# PI-1000, RRID:AB_2336198
Chemicals, peptides, and recombinant proteins
RO-3306 CalBioChem Cat# 217699; CAS:872,573-93-8
CDK2 inhibitor II Santa Cruz Cat# sc-221409; CAS:222,035-13-4
Adavosertib/MK-1775/AZD1775 SelleckChem Cat# S1525; CAS:955,365-80-7
Hydroxyurea Merck Cat# H8627; CAS:127-07-1
TMTpro™ 16plex Label Reagent Set Thermo Fisher Cat# A44520
Critical commercial assays
MagReSyn® Ti-IMAC HP LabLifeNordic Cat# MR-THP002
Deposited data
Proteomics data This paper MassIVE: PXD036374; MassIVE: PXD036373
Custom code used for proteomics data This paper Zenodo: https://doi.org/10.5281/zenodo.6344325
QIBC data and analysis code This paper Zenodo: https://doi.org/10.5281/zenodo.7022473
Experimental models: Cell lines
U2OS ATCC HTB-96
MFC10A ATCC CRL-10317
RPE ATCC Laboratory of Krister Wennerberg
OVCAR3 ATCC Laboratory of Krister Wennerberg
OVCAR8 ATCC Laboratory of Krister Wennerberg
Software and algorithms
Visual Studio Code Microsoft https://visualstudio.microsoft.com
R project N/A https://www.r-project.org
Spotfire 11 Tibco RRID:SCR_008858
ProteomeDiscoverer Thermo Fisher RRID:SCR_014477
Tidyverse (Wickham et al., 2019)75 https://tidyverse.tidyverse.org/
ggprism (Charlotte Dawson 2021) https://doi.org/10.5281/zenodo.4556067
ggplot2 (Wickham et al., 2016) https://ggplot2.tidyverse.org
ClusterProfiler (Wu et al., 2021)74 https://doi.org/10.1089/omi.2011.0118
VennDiagram (Chen and Boutros, 2011)76 https://cran.r-project.org/web/packages/VennDiagram/index.html
OmnipathR (Türei et al., 2016)25 https://omnipathdb.org/
Mfuzz (Kumar and Futschik, 2007)70 http://mfuzz.sysbiolab.eu/
ggseqlogo (Wagih, 2017)71 https://omarwagih.github.io/ggseqlogo/