a
|
Fractionation across the stomata |
‰ |
4.4 (Craig, 1953; a
s
in Ubierna et al., 2013, 2018) |
a
b
|
Fractionations across the boundary layer |
‰ |
2.9 |
|
Weighted fractionation across the boundary layer and stomata in series |
‰ |
Eqn 18 (Ubierna et al., 2013, 2018) |
Α
|
Rate of photosynthesis |
μmol m−2 s−1
|
Measured |
b
3
|
13C fractionation during carboxylation by Rubisco, including respiration and photorespiration fractionations |
‰ |
Eqn 13 (Farquhar, 1983) |
|
13C fractionation during carboxylation by Rubisco |
‰ |
30 |
b
4
|
Net fractionation by CO2 dissolution, hydration and phosphoenolpyruvate carboxylase (PEPC) including respiratory fractionation |
‰ |
Eqn 14 (Farquhar, 1983) |
|
Net fractionation by CO2 dissolution, hydration and PEPC activity dependent upon temperature |
‰ |
Eqn 15
|
C
a
|
Ambient CO2 partial pressure |
Pa |
Measured in μmol mol−1 air |
C
bs
|
CO2 partial pressure in the bundle‐sheath cells |
Pa |
Eqn 7
|
C
i
|
CO2 partial pressure at the intercellular airspace |
Pa |
Measured in μmol mol−1 air |
C
s
|
CO2 partial pressure at the leaf surface |
Pa |
Measured in μmol mol−1 air |
C
ref
|
CO2 concentration of the dry air exiting the leaf chamber |
μmol mol−1
|
Measured |
C
samp
|
CO2 concentration of the dry air exiting the leaf chamber |
μmol mol−1
|
Measured |
e
|
13C fractionation during decarboxylation |
‰ |
0 (Evans & von Caemmerer, 2013; Ubierna et al., 2013) |
e′ |
13C fractionation during decarboxylation including the effect of a respiratory substrate isotopically distinct from recent photosynthate |
‰ |
Eqn 16
|
E
|
Rate of transpiration |
mol m−2 s−1
|
Measured |
f
|
13C fractionation during photorespiration |
‰ |
1.6‰ (Ubierna et al., 2013) |
|
Total conductance to CO2 diffusion including boundary layer and stomatal conductance |
mol m−2 s−1
|
Measured |
g
bs
|
Bundle‐sheath conductance to CO2
|
mol m−2 s−1
|
0.00113 (Brown & Byrd, 1993) |
J
t
|
Total electron transport rate |
μmol m−2 s−1
|
Eqn 3 (von Caemmerer, 2000) |
O
m
|
O2 partial pressure in the mesophyll cells |
Pa |
21.2 Pa atmospheric pressure |
O
s
|
O2 partial pressure in the bundle‐sheath cells |
Pa |
Eqn 11 (von Caemmerer, 2000) |
R
d
|
Leaf mitochondrial respiration in the light assumed to equal the rate of respiration in the dark |
μmol m−2 s−1
|
Measured |
R
m
|
Rate of mesophyll cell respiration in the light |
μmol m−2 s−1
|
R
m = 0.5R
d
|
s
|
Fractionation during leakage from the bundle‐sheath cells |
‰ |
1.8 (Henderson et al., 1992) |
t
|
Ternary effect |
‰ |
Eqn 17
|
V
c
|
Rubisco carboxylation rate |
μmol m−2 s−1
|
Eqn 9 (von Caemmerer, 2000) |
V
o
|
Rubisco oxygenation rate |
μmol m−2 s−1
|
Eqn 10 (von Caemmerer, 2000) |
V
p
|
PEP carboxylation rate |
μmol m−2 s−1
|
Eqn 8 (von Caemmerer, 2000) |
x
|
Fraction of J
t allocated to the C4 cycle |
|
0.4 (von Caemmerer, 2000) |
α
|
Fraction of PSII activity in the bundle sheath |
|
0 (von Caemmerer, 2000) |
δ13Cgatm
|
Isotopic signature of growth CO2
|
‰ |
−8 |
δ13Cref
|
Isotopic signature of the CO2 entering the leaf chamber |
‰ |
Measured |
δ13Csamp
|
Isotopic signature of the CO2 exiting the leaf chamber |
‰ |
Measured |
ξ
|
Ratio of the 12CO2 mole fraction in the dry air coming into the gas‐exchange cuvette over the difference in 12CO2 mole fractions of air in and out of the cuvette |
unitless |
Eqn 2
|
Δ13Cobs
|
Observed 13C photosynthetic discrimination |
‰ |
Eqn 1
|
ϕ
is
|
Leakiness estimated assuming infinite mesophyll conductance |
Unitless |
Eqn 12
|