TABLE 2.
SNP | Region | (Alleles) M/m a | InterLymph | IMMEnSE | FinnGen | Combined analysis | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
OR (95%CI) | P value | OR (95%CI) | P value | OR (95%CI) | P value | OR (95%CI) | P value | I 2 b | Q b | Q‐P value | |||
rs34517439 | 1p31.1 | C/A | 1.30 (1.15‐1.48) | 4.70 × 10−5 | 1.09 (0.89‐1.34) | .402 | 1.21 (1.09‐1.34) | .071 | 1.22 (1.13–1.32) | 4.81 × 10 −7 | 7.30% | 2.25 | .325 |
rs6674512 | 1p22.3 | G/A | 1.40 (1.21‐1.62) | 8.71 × 10−6 | 1.10 (0.88‐1.36) | .402 | 1.04 (0.91‐1.20) | .765 | 1.17 (0.96‐1.43) | .115 | 77.50% | 9.74 | .008 |
rs10187103 | 2q24.3 | C/T | 0.84 (0.77‐0.91) | 6.06 × 10−5 | 0.99 (0.88–1.12) | .915 | 0.99 (0.90‐1.09) | .924 | 0.95 (0.83–1.08) | .397 | 81.10% | 10.38 | .006 |
rs1022206 | 3q13.13 | C/T | 1.18 (1.09‐1.28) | 8.61 × 10−5 | 1.11 (1.00–1.24) | .061 | 0.99 (0.92‐1.07) | .923 | 1.09 (0.97‐1.22) | .136 | 80.00% | 10.25 | .006 |
rs4143832 | 5q31.1 | G/T | 1.24 (1.12‐1.37) | 4.66 × 10−5 | 0.95 (0.83–1.08) | .439 | 0.91 (0.84‐0.99) | .275 | 1.02 (0.84‐1.25) | .819 | 91.30% | 22.96 | 1.03 × 10−5 |
rs537930 | 5q31.1 | G/T | 0.83 (0.76‐0.91) | 5.09 × 10−5 | 0.97 (0.86–1.09) | .571 | 0.96 (0.88‐1.04) | .596 | 0.92 (0.83‐1.01) | .088 | 70.10% | 6.51 | 3.80 × 10−2 |
rs1063348 | 6p21.32 | G/A | 1.19 (1.09‐1.30) | 7.44 × 10−5 | 0.95 (0.85–1.07) | .398 | NA c | NA | 1.07 (0.87‐1.32) | .534 | 89.6% | 14.49 | .001 |
rs13252276 | 8p23.1 | C/T | 0.77 (0.68‐0.87) | 3.10 × 10−5 | 1.01 (0.91–1.12) | .870 | 1.03 (0.96‐1.11) | .711 | 0.93 (0.79–1.10) | .415 | 88.00% | 17.50 | 2.00 × 10−4 |
rs465530 | 12q14.3 | G/T | 1.18 (1.09–1.28) | 4.94 × 10−5 | 1.01 (0.89–1.13) | .926 | 0.95 (0.88‐1.02) | .458 | 1.03 (0.90‐1.19) | .657 | 87.80% | 17.06 | 2.00 × 10−4 |
rs8132680 | 21q22.12 | T/C | 1.21 (1.11‐1.33) | 2.96 × 10−5 | 0.99 (0.88–1.12) | .924 | 1.04 (0.96‐1.13) | .646 | 1.08 (0.96‐1.21) | .197 | 77.40% | 8.06 | .018 |
M = the most common allele in controls; m = the less common allele in controls. The more common allele found in the control population has been used as reference and the other allele was defined as the exposure factor.
Measures of heterogeneity between the combined analysis components.
This polymorphism is not present in FinnGen, and therefore the combined analysis refers only to InterLymph and IMMEnSE populations.