| Gene (Plasmodium falciparum) |
var2csa
|
EuPathDB |
PF3D7_1200600 |
|
| Strain, strain background (P. falciparum) |
NF54 |
Delemarre and van der Kaay, 1979 (PMID:390409) |
NF54 |
|
| Strain, strain background (P. falciparum) |
3D7 |
Walliker et al., 1987 (PMID:3299700) |
3D7 |
|
| Transfected construct (P. falciparum) |
pL6_eGFP |
Ghorbal et al. (PMID:24880488) |
CRISPR-targeting plasmid |
|
| Transfected construct (P. falciparum) |
pUF1_Cas9 |
Ghorbal et al. (PMID:24880488) |
CRISPR-targeting plasmid |
|
| Software, algorithm |
aligner HISAT2 |
Kim et al., 2019 (PMID:31375807), Afgan et al., 2018 (PMID:29790989) |
v.2.2.0 |
|
| Software, algorithm |
featureCounts |
Liao et al., 2014 (PMID:24227677) |
Package Rsubread v.2.0.1 |
|
| Software, algorithm |
DESeq2 |
Love et al., 2014 (PMID:25516281) |
v.3.14 |
|
| Software, algorithm |
EdgeR |
Chen et al., 2016 (PMID:27508061), McCarthy et al., 2012 (PMID:22287627), Robinson et al., 2010 (PMID:19910308) |
v.3.14 |
|
| Software, algorithm |
R |
Rstudio (1.4.1717) |
v.4.1.0 |
|
| Software, algorithm |
vegan |
Community Ecology Package |
v.2.5-7 |
|
| Software, algorithm |
PERMANOVA |
Community Ecology Package |
v.2.5-7 |
|
| Software, algorithm |
heatmap.2 |
gplots |
v.2.3.0 |
|
