E_flank_f |
GCTGGAGCCACTTGTAGCC |
cassette integration test locus 2, sequencing P0s |
E_flank_r |
TCCTTGCTGAATCATTTTGTTC |
cassette integration test locus 2 |
P0_check_Fw |
GTGTGAGTGGCAGGGTAG |
sequencing P0s (together with E_flank_f) |
qPCR_galK _Fw |
GCTACCCTGCCACTCACA |
estimating galK copy number |
qPCR_galK _Rv |
CGCAGGGCAGAACGAAAC |
estimating galK copy number |
rbsB_qPCR_Fw |
GGCACAAAAATTCTGCTGATTAA |
qPCR control locus |
rbsB_qPCR_Rv |
GCAGCTCGATAACTTTGGC |
qPCR control locus |
P1_P0-1 |
GCCTTAGTTGTAAGTGTCTACCAT GTCCCCGAACAAGTGTTCACTATG TCTAGGCCCGCACGCAAGAC |
integration of the selection and reporter cassette with P0-1 (Fw primer) |
P1_P0-2 |
GCCTTAGTTGTAAGTGTCTACCAT GTCCCCGAACAAGTGTTCACTATG TCTCGGGGGGACAGCAGCG |
integration of the selection and reporter cassette with P0-2 (Fw primer) |
P1_P0-3 |
GCCTTAGTTGTAAGTGTCTACCAT GTCCCCGAACAAGTGTTCACTATG TCTGTATTTGGGATGCGGGTAGTAGA |
integration of the selection and reporter cassette with P0-3 (Fw primer) |
E_int_Rv |
TCGGAAGGGAAGAGGGAGTGCGGG AAATTTAAGCTGGATCACATATTGCC GAGGCCTTATGCTAGCTTC |
integration of the selection and reporter cassette (Rv primer) |
E_int_Fw |
GCCTTAGTTGTAAGTGTCTACCATGTC CCCGAACAAGTGTTCACTATGTCACCG GAAAGACGGGCTTC |
integration of the selection and reporter cassette with P0 (Fw primer) |
deep_seq_Fw |
TCGTCGGCAGCGTCAGATGTGTATAAG AGACAGACGGGTTCTTATGCCTTAGTT |
1st step PCR for amplicon deep sequencing (with 5´nextera anchor for Illumina sequencing) |
deep_seq_Rv |
GTCTCGTGGGCTCGGAGATGTGTATAA GAGACAGGTGTGAGTGGCAGGGTAG |
1st step PCR for amplicon deep sequencing (with 5´nextera anchor for Illumina sequencing) |