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. 2023 Jan 11;6:27. doi: 10.1038/s42003-023-04417-w

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 4 — a, b Principal coordinate analysis (PCoA) of bacterial community (a) and fungal community (b) in the rhizosphere soil between healthy (n = 12) and diseased (n = 12) plants based on the Bray-Curtis distance, showing the soil microbiomes associated with the healthy and diseased plants were clearly separated. Each symbol represents an individual. c, d NetShift analysis to identify potential driver taxa behind pathogen suppression based on bacterial (c) and fungal (d) networks of the rhizosphere microbiome. The node sizes are proportional to their scaled NESH (neighbor shift) scores, and a node is colored red if its betweenness increased from control to case. Large and red nodes denote particularly important driver taxa behind pathogen suppression, and the taxa names are shown in red. Edge (line) is assigned between the nodes; green edges, association present only in the diseased plant microbiome; red edges, association present only in the healthy plant microbiome; and blue, association present in both diseased and healthy plant microbiomes. e, f Redundancy analysis (RDA) investigating the relationship between bacterial (e) or fungal (f) communities and the soil properties. TN, total nitrogen; TP, total phosphorus; TF, total ferrum; SM, soil moisture; dots represent individual plants (n = 12).