Table 2.
Viral genomic RNA | SARS-CoV-2 genomic RNA | mRNA | Synthetic RNA | Average across all datasets | |
---|---|---|---|---|---|
# Datasets | 8 | 6 | 9 | 8 | 31 |
EternaFold | 1.29(0.21) | 1.65(0.12) | 1.26(0.43) | 0.75(0.50) | 1.21(0.47) |
CONTRAfold | 0.61(0.17) | 0.38(0.09) | −0.10(0.56) | 0.27(0.13) | 0.27(0.41) |
RNAsoft BLstar | 0.34(0.23) | 0.54(0.24) | 0.23(0.31) | −0.07(0.19) | 0.24(0.32) |
RNAstructure, 60°C | 0.10(0.27) | −0.25(0.20) | 0.32(0.36) | 0.21(0.07) | 0.12(0.32) |
ViennaRNA 2, 60°C | 0.04(0.26) | −0.25(0.22) | 0.37(0.25) | 0.18(0.03) | 0.11(0.30) |
ViennaRNA 2 | −1.19(0.30) | −1.00(0.16) | −0.97(0.43) | −0.65(0.32) | −0.95(0.37) |
RNAstructure | −1.20(0.26) | −1.06(0.16) | −1.11(0.34) | −0.70(0.38) | −1.02(0.35) |
Standard deviation of Z-scores in parentheses. Top-performing package for each is bolded.