Skip to main content
. Author manuscript; available in PMC: 2023 Apr 3.
Published in final edited form as: Nat Methods. 2022 Oct 3;19(10):1234–1242. doi: 10.1038/s41592-022-01605-0

Table 2.

Average Z-score for each external RNA class.

Viral genomic RNA SARS-CoV-2 genomic RNA mRNA Synthetic RNA Average across all datasets
# Datasets 8 6 9 8 31
EternaFold 1.29(0.21) 1.65(0.12) 1.26(0.43) 0.75(0.50) 1.21(0.47)
CONTRAfold 0.61(0.17) 0.38(0.09) −0.10(0.56) 0.27(0.13) 0.27(0.41)
RNAsoft BLstar 0.34(0.23) 0.54(0.24) 0.23(0.31) −0.07(0.19) 0.24(0.32)
RNAstructure, 60°C 0.10(0.27) −0.25(0.20) 0.32(0.36) 0.21(0.07) 0.12(0.32)
ViennaRNA 2, 60°C 0.04(0.26) −0.25(0.22) 0.37(0.25) 0.18(0.03) 0.11(0.30)
ViennaRNA 2 −1.19(0.30) −1.00(0.16) −0.97(0.43) −0.65(0.32) −0.95(0.37)
RNAstructure −1.20(0.26) −1.06(0.16) −1.11(0.34) −0.70(0.38) −1.02(0.35)

Standard deviation of Z-scores in parentheses. Top-performing package for each is bolded.