Table 2.
Comparison of T. affinis assembly (SOAPdenovo2 and SPAdes) metrics and quality with similar short read assemblies of A. rosecollis [49]; M. undulatus, G. gallus, T. guttata, F. peregrinus and N. notabilis [46]; A. vittata [52] and A. macao [53] using BUSCO.
| Assembly | T. affinis (SOAPdenovo2 assembly) | T. affinis (SPAdes assembly) | Agapornis roseicollis | Melopsittacus undulatus | Gallusgallus | Taeniopygia guttata | Amazona vittata | Ara macao | Falco peregrinus | Nestor notabilis |
|---|---|---|---|---|---|---|---|---|---|---|
| Complete (%) | 18.3 | 44.7 | 85.2 | 81.2 | 88.8 | 81.9 | 59.5 | 45.2 | 88.2 | 70.3 |
| Missing (%) | 74 | 45.9 | 7.5 | 14.2 | 10.5 | 5.6 | 16.1 | 30 | 7.5 | 14.8 |
| Fragmented (%) | 7.7 | 9.4 | 7.3 | 4.6 | 0.7 | 12.5 | 24.4 | 24.8 | 4.3 | 14.9 |