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. Author manuscript; available in PMC: 2024 Jan 1.
Published in final edited form as: Antiviral Res. 2022 Nov 25;209:105476. doi: 10.1016/j.antiviral.2022.105476

Table 3:

A summary of the structures and functions of the alphaviral nsPs

Protein Structures Functions
nsP1 methyl transferase domain, guanyl transferase domain, membrane association domains caps viral RNA making it usable by ribosomes, anchors the replication machinery to cellular membranes111,129131,133136
nsP2 helicase domain, ADP binding region, cysteine protease, methyl transferase like domain unwinds viral RNA for replication, cleaves the polyprotein into its constitutive parts, digests host cell proteins77,132,138142,144146,152157
nsP3 macrodomain, alphavirus unique domain, hypervariable domain poorly described, necessary for replication, highly involved in host cell interactions129,160168,170172,174,175
nsP4 RNA dependent RNA polymerase domain synthesizes new viral RNA71,77,129,176178,180182,185