Table 1.
ATGtg-starting genes ranked by protein abundance (56) with their respective SD motifs (≥4 nts) and the aligned spacing (DtoStart) to the annotated 5′ AUG start codon. Initiation sites for which ambiguity is predicted are annotated accordingly
| Gene | Protein abundance (ppm) | SD sequence | D toStart | Predicted ambiguity |
|---|---|---|---|---|
| ytfQ | 329.000 | AGGA, GAGG | 13, 16 | no |
| glmS | 215.000 | — | — | — |
| asnB | 140.000 | GGAG, AGGU | 13, 10 | no |
| yniA | 133.000 | GGAG | 14 | no |
| purF | 67.700 | AGGA, GAGG | 15, 18 | no |
| yjbQ | 26.900 | AAGGAG | 13 | no |
| trmD | 11.800 | — | — | — |
| yafJ | 9.410 | GGAGGU | 14 | no |
| appC | 4.720 | AGGAG | 12 | yes |
| hypB | 2.090 | AGGAG | 13 | no |
| hypC | 1.040 | GGAG | 15 | no |
| ydhB | 0.917 | — | — | — |
| yhdN | 0.177 | GGAG | 12 | yes |
| yedK | 0.176 | AGGAGGU | 13 | no |
| pqiA | 0.175 | UAAGGAG | 12 | yes |
| hybG | 0.094 | GGAG | 13 | no |
| ccmC | 0.045 | — | — | — |
| yjbM | 0.002 | — | — | — |
| yaaY | — | UAAG | 12 | yes |
| caiF | — | GGAG | 12 | yes |
| yobF | — | GAGGU | 21 | no |
| cydX | — | UAAGGAG | 13 | no |
| appX | — | UAAGGAG | 15 | no |