Table 2.
atGTG-starting genes ranked by protein abundance (56) with their respective SD motifs (≥4 nts) and the aligned spacing (DtoStart) to the annotated 5′ AUG start codon. Initiation sites for which ambiguity is predicted are annotated accordingly
| Gene | Protein abundance (ppm) | SD sequence | D toStart | Predicted ambiguity |
|---|---|---|---|---|
| lapA | 668.000 | — | — | — |
| hdhA | 447.000 | AGGAGGU | 13 | no |
| yaeP | 94.500 | AGGAGG | 12 | no |
| secF | 41.600 | AGGAG | 13 | no |
| ruvA | 28.900 | AGGAG | 13 | no |
| nsrR | 27.600 | GAGGU | 13 | no |
| wecB | 14.300 | — | — | — |
| tamA | 8.010 | AAGGA, AGGAG | 21, 12 | yes |
| lacI | 5.670 | — | — | — |
| rlhA | 3.800 | UAAG | 7 | no |
| kdpE | 3.700 | GAGG | 12 | no |
| marR | 3.320 | — | — | no |
| kduI | 1.250 | GGAGGU | 13 | no |
| recQ | 0.594 | — | — | — |
| hicA | 0.021 | GGAGG | 12 | no |
| leuE | 0.002 | GAGGU | 13 | no |
| yedR | — | — | — | — |
| napF | — | AAGG, AGGU | 10, 13 | no |