Table 3.
gtGTG-starting genes ranked by protein abundance (56) with their respective SD motifs (≥4 nts) and the aligned spacing (DtoStart) to the annotated 5′ AUG start codon. Initiation sites for which ambiguity is predicted are annotated accordingly
| Gene | Protein abundance (ppm) | SD sequence | D toStart | Predicted ambiguity |
|---|---|---|---|---|
| metH | 48.400 | GGAG | 12 | no |
| focA | 36.200 | — | — | — |
| nagZ | 20.300 | UAAGGAG | 13 | no |
| fes | 14.000 | — | — | — |
| cytR | 1.690 | AGGAG | 12 | no |
| nfrB | 0.969 | UAAGG | 12 | no |
| ycgY | 0.564 | — | — | — |
| yoaA | 0.204 | — | — | — |
| narQ | 0.115 | GGAG | 16 | yes |
| ytfT | 0.086 | UAAGGAG | 13 | no |
| yahE | 0.058 | — | — | — |
| pphC | 0.004 | AAGG | 17 | yes |