Table 1.
Serotype |
Kapatai et al. 2017 [54] |
Metcalf et al. 2017 [55] |
Sheppard et al. 2016 [53] |
Current study |
|||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Accession |
L(bp) |
Region |
Accession |
L(bp) |
Start |
End |
Id% |
Region |
Accession |
L(bp) |
Start |
End |
Id% |
Region |
Accession |
L(bp) |
Start |
End |
Id% |
Region |
|
Ia |
15 799 |
cps locus |
143 |
6284 |
6426 |
94.41 |
cpsH |
4714 |
5538 |
10 254 |
99.15 |
cpsG - cpsK |
– |
6712 |
3539 |
10 250 |
100 |
cpsD - cpsK |
|||
Ib |
15 807 |
143 |
6396 |
6538 |
100 |
cpsH |
4617 |
5650 |
10 266 |
100 |
– |
6616 |
3651 |
10 266 |
100 |
||||||
II |
17 514 |
139 |
11 345 |
11 483 |
100 |
cpsK |
6307 |
5575 |
11 881 |
99.84 |
– |
8315 |
3567 |
11 881 |
100 |
||||||
III |
15 760 |
172 |
6631 |
6802 |
99.42 |
cpsH |
4602 |
5592 |
10 193 |
99.33 |
n/a |
– |
– |
– |
– |
||||||
III-1 |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
SG-M340* |
6610 |
3593 |
10 202 |
99.33 |
|||
III-2 |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
SG-M40* |
6602 |
3593 |
10 194 |
99.35 |
|||
III-3 |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
SG-M61* |
6610 |
3593 |
10 202 |
99.67 |
|||
III-4 |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
– |
SG-M918* |
6610 |
3593 |
10 202 |
99.45 |
|||
IV |
16 549 |
222 |
6670 |
6891 |
100 |
cpsH |
5240 |
5731 |
10 971 |
99.98 |
– |
7249 |
3723 |
10 971 |
100 |
||||||
V |
17 319 |
171 |
9107 |
9277 |
100 |
cpsO |
6148 |
5578 |
11 725 |
100 |
– |
8156 |
3570 |
11 725 |
100 |
||||||
VI |
15 847 |
99 |
7385 |
7483 |
100 |
cpsH |
4477 |
5777 |
10 254 |
99.89 |
– |
6477 |
3778 |
10 254 |
100 |
||||||
VII |
16 473 |
160 |
7535 |
7694 |
100 |
cpsM |
5264 |
5578 |
10 842 |
99.45 |
– |
7272 |
3570 |
10 841 |
100 |
||||||
VIII |
15 090 |
113 |
8167 |
8279 |
100 |
cpsJ |
4370 |
5117 |
9487 |
99.98 |
– |
5915 |
3541 |
9455 |
100 |
||||||
IX |
16 440 |
130 |
8665 |
8794 |
100 |
cpsO |
n/a |
– |
– |
– |
– |
– |
7273 |
3581 |
10 853 |
100 |
Boxes in white - Start, End, Id%, Region relative to sequences from the Kapatai database.
Boxes in grey - Start, End, Id%, Region relative to the serotype III sequence from the Kapatai database.
*Isolate names from the current study; Id%: Percentage nucleotide identity; L(bp): Length in base pairs)