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. 2021 Dec 9;7(12):000688. doi: 10.1099/mgen.0.000688

Table 1.

GBS serotype reference databases used in the current study

Serotype

Kapatai et al. 2017 [54]

Metcalf et al. 2017 [55]

Sheppard et al. 2016 [53]

Current study

Accession

L(bp)

Region

Accession

L(bp)

Start

End

Id%

Region

Accession

L(bp)

Start

End

Id%

Region

Accession

L(bp)

Start

End

Id%

Region

Ia

LT671983

15 799

cps locus

AB028896.2

143

6284

6426

94.41

cpsH

AB028896.2

4714

5538

10 254

99.15

cpsG - cpsK

6712

3539

10 250

100

cpsD - cpsK

Ib

LT671984

15 807

AB050723.1

143

6396

6538

100

cpsH

AB050723.1

4617

5650

10 266

100

6616

3651

10 266

100

II

LT671985

17 514

AY375362.1

139

11 345

11 483

100

cpsK

EF990365.1

6307

5575

11 881

99.84

8315

3567

11 881

100

III

LT671986

15 760

AF163833.1

172

6631

6802

99.42

cpsH

AF163833.1

4602

5592

10 193

99.33

n/a

III-1

SG-M340*

6610

3593

10 202

99.33

III-2

SG-M40*

6602

3593

10 194

99.35

III-3

SG-M61*

6610

3593

10 202

99.67

III-4

SG-M918*

6610

3593

10 202

99.45

IV

LT671987

16 549

AF355776.1

222

6670

6891

100

cpsH

AF355776.1

5240

5731

10 971

99.98

7249

3723

10 971

100

V

LT671988

17 319

AF349539.1

171

9107

9277

100

cpsO

AF349539.1

6148

5578

11 725

100

8156

3570

11 725

100

VI

LT671989

15 847

AF337958.1

99

7385

7483

100

cpsH

AF337958.1

4477

5777

10 254

99.89

6477

3778

10 254

100

VII

LT671990

16 473

AY376403.1

160

7535

7694

100

cpsM

AY376403.1

5264

5578

10 842

99.45

7272

3570

10 841

100

VIII

LT671991

15 090

AY375363.1

113

8167

8279

100

cpsJ

AY375363.1

4370

5117

9487

99.98

5915

3541

9455

100

IX

LT671992

16 440

GQ499301.1

130

8665

8794

100

cpsO

n/a

7273

3581

10 853

100

Boxes in white - Start, End, Id%, Region relative to sequences from the Kapatai database.

Boxes in grey - Start, End, Id%, Region relative to the serotype III sequence from the Kapatai database.

*Isolate names from the current study; Id%: Percentage nucleotide identity; L(bp): Length in base pairs)