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. Author manuscript; available in PMC: 2023 Jan 16.
Published in final edited form as: Semin Immunol. 2022 Jun 25;59:101627. doi: 10.1016/j.smim.2022.101627

Table 1.

Compilation of X-ray Crystal Structures of Human C3 or Its Fragments, Either Free or Bound to Various Ligands Involved in Activation, Regulation, or Inhibition.

Class C3 Protein Ligand(s) PDB IDa,b Resolution
(Å)
Authors Citation
C3 Proper C3 - 2A73 3.3 Janssen et al. [12]
C3a 4HW5 2.3 Bajic et al. [86]
C3b - 2I07 4.0 Janssen et al. [15]
C3b - 5F07 2.8 Forneris et al. [43]
iC3b1 hC3Nb1 6YO6 6.0 Jensen et al. [87]
C3c - 2A74 2.4 Janssen et al. [12]
C3d - 1C3D 1.8 Nagar et al. [88]
C3 convertase C3b Factor B 2XWJ 4.0 Forneris et al. [24]
C3b Factor B
Factor D
2XWB 3.5 Forneris et al. [24]
C3b Factor Bb
S. aureus SCIN
2WIN 3.9 Rooijakkers et al. [33]
C3b Factor Bb
Factor P, monomeric formc
S. aureus SCIN
6RUR 6.0 Pedersen et al. [35]
C345c Factor P, monomeric formd 6S0B 2.3 van den Bos et al. [36]
Regulators C3b MCP, CCP(1-4) 5FO8 2.4 Forneris et al. [43]
C3b CR1, CCP(15-17) 5FO9 3.3 Forneris et al. [43]
C3b DAF, CCP(2-4) 5FOA 4.2 Forneris et al. [43]
C3b Factor H, CCP(1-4) 2WII 2.7 Wu et al. [44]
C3d Factor H, CCP(19-20) 2XKW
3OXU
2.3
2.1
Kajander et al.
Morgan et al.
[89]
[90]
C3b mini-FHe, CCP(1-4)+(19-20) 5O32 4.2 Xue et al. [46]
C3b mini-FHe, CCP(1-4)+(19-20) Factor I 5O35 4.2 Xue et al. [46]
Receptors C3c CRIg, Ig(1) 2ICE 3.1 Wiesmann et al. [23]
C3b CRIg, Ig(1) 2ICF 4.1 Wiesmann et al. [23]
iC3b CR3, I-domain 7AKK 3.4 Fernandez et al. [58]
C3d CR2, CCP(1-2) 3OED 3.2 van den Elsen et al. [55]
C3d CR3, I-domain 4M76 2.8 Bajic et al. [57]
Inhibitors C3b Variola virus SPICE, CCP(1-4) 5FOB 2.6 Forneris et al. [43]
C3c S. aureus SCIN 3OHX 3.5 Garcia et al. [22]
C3c S. aureus SCIN-B 3T4A 3.4 Garcia et al. [66]
C3b S77, Fab fragment 3G6J 3.1 Katschke et al. [68]
C3b hC3Nb1 6EHG 2.7 Jensen et al. [67]
C3c Compstatin, 4W9A 2QKI 2.4 Janssen et al. [75]
C3b Compstatin, Cp40 7BAG 2.0 Lamers et al. [74]
C3d S. aureus Efb-C 2GOX 2.2 Hammel et al. [18]
C3d S. aureus Ehp 2NOJ 2.7 Hammel et al. [19]
C3d S. aureus Sbi, Domain IV 2WY7
2WY8
1.7 Clark et al. [21]
C3d Factor H, CCP(19-20)
B. burgdorferi OspE
5NBQ 3.2 Kolodziejczyk et al. [91]
a

As of this writing, there are 54 unique PDB depositions of crystal structures containing various forms of human C3.

b

In general, only the first report of a structure determination is highlighted in this Table. However, certain structures representing particularly important features or significant improvements in either resolution or model quality are also included. Structures representing alternative crystal forms, site-directed mutants, or various ligands when unbound to C3 or its fragments are omitted in the interest of space.

c,d

Further information on the nature and characterization of the monomeric form of properdin may be found in the publication of Pedersen et al. [34].

e

Further information on the nature and characterization of the mini-FH protein may be found in the original manuscript by Schmidt et al. [47].