Table 3. Molecular docking results of 5 key genes with their corresponding compounds in Rhubarb-Coptis.
PDB ID | Key targets | Compounds | Binding energy (kcal/mol) |
---|---|---|---|
4JPS | PIK3CA | Quercetin | −9.2 |
4JPS | PIK3CA | Berberine | −8.9 |
4JPS | PIK3CA | Epiberberine | −8.5 |
4JPS | PIK3CA | Moupinamide | −8.5 |
4JPS | PIK3CA | EUPATIN | −8.0 |
6NJS | STAT3 | Berberine | −7.5 |
1UOL | TP53 | Berberine | −7.4 |
6NJS | STAT3 | Epiberberine | −7.4 |
1UOL | TP53 | Moupinamide | −6.9 |
6NJS | STAT3 | EUPATIN | −6.8 |
1UOL | TP53 | Epiberberine | −6.8 |
1JDH | CTNNB1 | Quercetin | −6.6 |
1JDH | CTNNB1 | Berberine | −6.6 |
1JDH | CTNNB1 | EUPATIN | −6.6 |
1UOL | TP53 | Quercetin | −6.5 |
1JDH | CTNNB1 | Epiberberine | −6.5 |
6NJS | STAT3 | Moupinamide | −6.4 |
1JDH | CTNNB1 | Moupinamide | −6.3 |
1UOL | TP53 | EUPATIN | −6.3 |
6NJS | STAT3 | Quercetin | −6.2 |
5M6U | PIK3R1 | Berberine | −6.1 |
5M6U | PIK3R1 | Epiberberine | −6.1 |
5M6U | PIK3R1 | Moupinamide | −6.1 |
5M6U | PIK3R1 | Quercetin | −5.5 |
5M6U | PIK3R1 | EUPATIN | −5.2 |
PDB, Protein Data Bank.