Table 3.
Statistics of RNA-seq data.
| PCCV | 1321DP1 | 1321DP7 | 1321DP8 | |
|---|---|---|---|---|
| Raw reads | 7,719,810 | 7,941,990 | 8,115,158 | 7,615,144 |
| Clean reads | 7,632,440 | 7,881,858 | 8,052,880 | 7,558,308 |
| Raw bases | 1.16G | 1.2G | 1.22G | 1.15G |
| Clean bases | 1.15G | 1.19G | 1.21G | 1.14G |
| Error rate | 0.03 | 0.03 | 0.03 | 0.03 |
| Q20 | 97.65 | 97.75 | 97.74 | 97.82 |
| Q30 | 93.24 | 93.35 | 93.19 | 93.39 |
| GC content | 49.97 | 50.37 | 50.23 | 50.3 |
| rRNA | 0.47 | 0.44 | 0.38 | 0.39 |
| Total mapped | 7,366,806 (96.52%) | 7,838,479 (99.45%) | 7,941,202 (98.61%) | 7,509,040 (99.35%) |
| Multiple mapped | 958,925 (12.56%) | 1,258,513 (15.97%) | 1,182,923 (14.69%) | 1,125,455 (14.89%) |
| Uniquely mapped | 6,407,881 (83.96%) | 6,579,966 (83.48%) | 6,758,279 (83.92%) | 6,383,585 (84.46%) |
| Read-1 mapped | 3,206,528 (42.01%) | 3,292,885 (41.78%) | 3,381,947 (42%) | 3,194,280 (42.26%) |
| Read-2 mapped | 3,201,353 (41.94%) | 3,287,081 (41.7%) | 3,376,332 (41.93%) | 3,189,305 (42.2%) |
| Reads map to ‘+’ | 3,204,036 (41.98%) | 3,290,121 (41.74%) | 3,379,175 (41.96%) | 3,192,180 (42.23%) |
| Reads map to ‘−’ | 3,203,845 (41.98%) | 3,289,845 (41.74%) | 3,379,104 (41.96%) | 3,191,405 (42.22%) |
| Reads mapped in proper pairs | 6,343,264 (83.11%) | 6,515,694 (82.67%) | 6,698,486 (83.18%) | 6,323,232 (83.66%) |