Table 4.
Top20 up-regulated and down-regulated DEGs in 1321DP8.
| Regulation | Gene ID | log2FoldChange | Value of p | Gene description | TF family | |
|---|---|---|---|---|---|---|
| Up-regulated | slr5013 | 6.948 | 0.000 | Hypothetical protein | ||
| slr8044 | 5.862 | 0.023 | Hypothetical protein | |||
| slr0951 | 5.862 | 0.023 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | |||
| sll0790 | 5.644 | 0.041 | HAMP domain-containing histidine kinase | HATPase_c | ||
| ST6803t05 | 3.075 | 0.035 | tRNA-Val | |||
| sll1874 | 2.912 | 0.000 | Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase | |||
| sll1875 | 2.849 | 0.000 | Heme oxygenase (biliverdin-producing) | |||
| slr1667 | 2.696 | 0.000 | Hypothetical protein | |||
| sll1192 | 2.545 | 0.003 | Fluoride efflux transporter CrcB | |||
| slr2103 | 2.238 | 0.000 | Acyltransferase Family protein | |||
| SGL_RS20165 | 2.234 | 0.030 | Hypothetical protein | |||
| sll1160 | 2.128 | 0.044 | Hypothetical protein | |||
| slr1920 | 1.975 | 0.014 | Hypothetical protein | |||
| slr8029 | 1.958 | 0.025 | Recombinase family protein | Resolvase | ||
| slr0607 | 1.933 | 0.004 | Cyclic nucleotide-binding domain-containing protein | cNMP_binding | ||
| slr1052 | 1.908 | 0.001 | Tetratricopeptide repeat protein | |||
| slr1452 | 1.895 | 0.000 | Sulfate ABC transporter substrate-binding protein | |||
| sll0419 | 1.880 | 0.033 | Hypothetical protein | |||
| sll1876 | 1.818 | 0.000 | Oxygen-independent coproporphyrinogen III oxidase | Radical_SAM | ||
| SGL_RS19135 | 1.806 | 0.000 | DUF559 domain-containing protein | DUF559 | ||
| Down-regulated | slr5082 | −6.447 | 0.002 | Rpn family recombination-promoting nuclease/putative transposase | ||
| sll5062 | −6.447 | 0.002 | Hypothetical protein | |||
| slr6103 | −6.161 | 0.007 | Protein of unknown function DUF45 | DUF45 | ||
| sll1005 | −6.161 | 0.007 | Nucleoside triphosphate pyrophosphohydrolase | |||
| slr1148 | −6.161 | 0.007 | DUF4269 domain-containing protein | DUF4269 | ||
| sll1319 | −5.804 | 0.023 | DMT family transporter | DUF6 | ||
| SGL_RS20130 | −5.804 | 0.023 | Hypothetical protein | |||
| SGL_RS19080 | −5.586 | 0.041 | Hypothetical protein | |||
| SGL_RS19680 | −5.586 | 0.041 | Hypothetical protein | |||
| SGL_RS19235 | −5.586 | 0.041 | Hypothetical protein | |||
| sll0909 | −4.032 | 0.000 | DnaJ family molecular chaperone | |||
| SGL_RS20145 | −3.375 | 0.008 | Hypothetical protein | |||
| sll0494 | −3.375 | 0.008 | Hypothetical protein | |||
| SGL_RS19495 | −3.328 | 0.000 | Hypothetical protein | |||
| slr6031 | −3.251 | 0.013 | DNA cytosine methyltransferase | |||
| ssl7046 | −3.115 | 0.022 | Putative toxin-antitoxin system toxin component | |||
| sll8033 | −3.115 | 0.022 | Hypothetical protein | |||
| slr1170 | −2.840 | 0.000 | TMEM165/GDT1 family protein | |||
| slr0305 | −2.676 | 0.012 | TVP38/TMEM64 family protein | |||
| slr7071 | −2.570 | 0.018 | CRISPR-associated endonuclease Cas1 |