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. 2022 Dec 28;10(1):ofac695. doi: 10.1093/ofid/ofac695

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© The Author(s) 2022. Published by Oxford University Press on behalf of Infectious Diseases Society of America.

This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 2. — Core gene–based phylogenetic analysis of the 1050 Salmonella Oranienburg strains classified as clade 7 in Figure 1. Single-nucleotide polymorphisms (SNPs) were identified using the finished genome sequence of strain 0250 as a reference. Based on the 11 412 SNPs identified in 3158 core genes, a midpoint-rooted maximum-likelihood tree was constructed using IQ-TREE with a model inferred by ModelTest and 2000 bootstrap replicates. Bars represent the number of substitutions per site. The total 38 colored strains containing the 12 bacteremia-related strains, 13 strains that were clustered with the 12 bacteremia-related strains, and the 13 strains in sister branches are analyzed in Figure 3. Abbreviations: CC, continent or country; DI, detailed information of human sources; SC, sources.