Table 2.
Sequence characteristics of the individual partitions in the plastid dataset. SD = standard deviation.
| rpl32-trnL | trnQ-rps16 | trnK intron | matK CDS | trnK-psbA | ITS | |
|---|---|---|---|---|---|---|
| Dataset including hotspots | ||||||
| Number of sequences | 202 | 202 | 202 | 202 | 202 | 145 |
| Aligned length | 1372 | 1166 | 1229 | 1536 | 270 | 714 |
| Mean length (SD) | 786 (89) | 688 (120) | 815 (163) | 1406 (332) | 195 (95) | 674 (33) |
| Dataset excluding hotspots | ||||||
| Aligned length | 1236 | 1068 | 1186 | 1537 | 270 | 714 |
| Mean length (SD) | 755 (78) | 653 (114) | 793 (160) | 1405 (332) | 195 (95) | 674 (33) |
| % variable characters | 31.5 | 23.6 | 16.8 | 22.4 | 16.2 | 33.3 |
| % informative characters | 18.8 | 8.3 | 5.3 | 8.8 | 4.4 | 27.5 |
| Number of coded indels | 106 | 102 | 52 | 17 | 10 | 43 |
| jModeltest v.2.1.6, AIC results | GTR+G | TPM1uf+G | TPM1uf+I+G | TPM1uf+I+G | -- | SYM+I+G |