Table 1.
List of specimens/sequences with at least one ncRNA beyond the ordinary rRNA genes. GenBank and collection/herbarium accession numbers are shown. The columns SRP, nuclear RNase P, RNase MRP, and U14 indicate whether these genes were recovered in the ribosomal operon of the specimen/sequence in question. The majority of the Auriculariaauricula-judae sequences are from Li et al. (2014). a) For entry WGS:NEKD01, the contig NEKD01000094 contains four operons covering SSU-5S. b) For entry WGS:AFVO01, no rRNA operon could be found in the assembly. c) For entry WGS:QFEN01, the ncRNA genes were found on separate contigs (viz. nuclear RNase P in QFEN01000681, RNase MRP in QFEN01000187, and SRP in QFEN01000909). d) For entry WGS:RJDY01, the ncRNA genes are found in the three operons in RJDY01000048. Accession numbers given in bold were produced as part of this study. WGS project identifiers refer to the NCBI Whole Genome Shotgun assembly database.
| GenBank | Species name | Voucher specimen | nuclear RNase P | RNase MRP | SRP | U14 |
|---|---|---|---|---|---|---|
| OM964555 | Inocybecincinnata | EL113-16 | Y | N | N | Y |
| OM964556 | Inocybeflocculosa | EL168-16 | Y | N | N | Y |
| OM964554 | Inocybeleiocephala | EL85-16 | Y | N | N | Y |
| OM964557 | Inocybephaeocystidiosa | EL23-16 | N | N | N | N |
| OM964558 | Auriculariacornea | MFLU16-2108 | Y | Y | Y | Y |
| OM964559 | Auriculariadelicata | MFLU16-2118 | Y | Y | Y | Y |
| WGS:NEKD01 | Auriculariaheimuer (a) | Dai 13782 | Y | Y | Y | Y |
| WGS:AFVO01 | Auriculariasubglabra (b) | TFB-10046 SS5 | N | N | N | N |
| WGS:QFEN01 | Auriculariapolytricha (c) | MG66 | Y | Y | Y | N |
| JF440699.1 | Auriculariapolytricha | AP112 | Y | Y | Y | Y |
| JF440698.1 | Auriculariapolytricha | APFJ | Y | Y | Y | Y |
| JF440701.1 | Auriculariadelicata | ADFJ | Y | Y | Y | Y |
| JF440702.1 | Auriculariadelicata | AD5424 | Y | Y | Y | Y |
| JF440697.1 | Auriculariafuscosuccinea | AFJLH | Y | Y | Y | Y |
| JF440700.1 | Auriculariapeltata | APLME | Y | Y | Y | Y |
| MN156315 | Auriculariacornea | B02 | Y | Y | Y | Y |
| WGS:RJDY01 | Auriculariacornea (d) | CCMJ2827 | Y | Y | Y | Y |
| HQ414239.1 | Auriculariaauricula-judae | XK-1 | Y | Y | Y | Y |
| HQ414240.1 | Auriculariaauricula-judae | HE-1 | Y | Y | Y | Y |
| HQ414241.1 | Auriculariaauricula-judae | DP-5 | Y | Y | Y | Y |
| HQ414242.1 | Auriculariaauricula-judae | XE-987 | Y | Y | Y | Y |
| HQ414243.1 | Auriculariaauricula-judae | ZHI-5 | Y | Y | Y | Y |
| JF440694.1 | Auriculariaauricula-judae | HW5D31 | Y | Y | Y | Y |
| JF440695.1 | Auriculariaauricula-judae | 5L0109 | Y | Y | Y | Y |
| JF440696.1 | Auriculariaauricula-judae | 5L0096 | Y | Y | Y | Y |
| JF440735.1 | Auriculariaauricula-judae | 9809 | Y | Y | Y | Y |
| JF440737.1 | Auriculariaauricula-judae | HE-9 | Y | Y | Y | Y |
| JF440738.1 | Auriculariaauricula-judae | ME-6 | Y | Y | Y | Y |
| JF440739.1 | Auriculariaauricula-judae | XE-887 | Y | Y | Y | Y |
| JF440740.1 | Auriculariaauricula-judae | HE-3 | Y | Y | Y | Y |
| JF440741.1 | Auriculariaauricula-judae | SHAN-1 | Y | Y | Y | Y |
| JF440742.1 | Auriculariaauricula-judae | 8129 | Y | Y | Y | Y |
| JF440743.1 | Auriculariaauricula-judae | DA-2 | Y | Y | Y | Y |
| JF440744.1 | Auriculariaauricula-judae | 173 | Y | Y | Y | Y |
| JF440745.1 | Auriculariaauricula-judae | HME-1 | Y | Y | Y | Y |
| JF440746.1 | Auriculariaauricula-judae | 139 | Y | Y | Y | Y |
| JF440747.1 | Auriculariaauricula-judae | 186 | Y | Y | Y | Y |
| JF440748.1 | Auriculariaauricula-judae | C21 | Y | Y | Y | Y |
| JF440749.1 | Auriculariaauricula-judae | CBS-7 | Y | Y | Y | Y |
| JF440750.1 | Auriculariaauricula-judae | DZ-1 | Y | Y | Y | Y |
| JF440751.1 | Auriculariaauricula-judae | HEI-29 | Y | Y | Y | Y |
| JF440752.1 | Auriculariaauricula-judae | SN-A8 | Y | Y | Y | Y |
| JF440753.1 | Auriculariaauricula-judae | XP-10 | Y | Y | Y | Y |
| JF440754.1 | Auriculariaauricula-judae | YM-1 | Y | Y | Y | Y |
| JF440755.1 | Auriculariaauricula-judae | 8808 | Y | Y | Y | Y |
| JF440756.1 | Auriculariaauricula-judae | 35431 | Y | Y | Y | Y |
| JF440757.1 | Auriculariaauricula-judae | DA-1 | Y | Y | Y | Y |
| JF440758.1 | Auriculariaauricula-judae | DA-3 | Y | Y | Y | Y |
| JF440759.1 | Auriculariaauricula-judae | JY-1 | Y | Y | Y | Y |
| JF440760.1 | Auriculariaauricula-judae | ZJ-310 | Y | Y | Y | Y |
| JF440761.1 | Auriculariaauricula-judae | YE-K3 | Y | Y | Y | Y |
| JF440762.1 | Auriculariaauricula-judae | HEI-916 | Y | Y | Y | Y |
| JN712676.1 | Auriculariaauricula-judae | AU110 | Y | Y | Y | Y |