TABLE 1.
The significant SNPs identified by GWAS analysis of GGP Porcine 50K Chip.
| SNP | Location | SNP effect | p-value | Candidate gene |
|---|---|---|---|---|
| WU_10.2_8_32052217 | chr3:123152070 | −0.359903 | 9.77E-09 | ENSSSCG00000043944 |
| LRATD1 | ||||
| ENSSSCG00000048577 | ||||
| ENSSSCG00000042932 | ||||
| ENSSSCG00000041405 | ||||
| ENSSSCG00000045589 | ||||
| ALGA0073634 | chr13:194840009 | 0.390875 | 1.35E-08 | ENSSSCG00000039409 |
| KRTAP11-1 | ||||
| SCAF4 | ||||
| SOD1 | ||||
| TIAM1 | ||||
| WU_10.2_3_124292040 | chr3:116471054 | 0.452164 | 6.51E-07 | ENSSSCG00000047227 |
| ENSSSCG00000048838 | ||||
| WU_10.2_13_204954425 | chr13:194555673 | 0.326668 | 6.64E-07 | ENSSSCG00000039409 |
| KRTAP11-1 | ||||
| TIAM1 | ||||
| WU_10.2_3_124371187 | chr3:116704665 | 0.368326 | 3.37E-06 | ENSSSCG00000048838 |
| WU_10.2_3_124478097 | chr3:116746742 | 0.362195 | 4.17E-06 | ENSSSCG00000048838 |
| CASI0009756 | chr13:194739193 | 0.287076 | 8.45E-06 | ENSSSCG00000039409 |
| KRTAP11-1 | ||||
| TIAM1 | ||||
| H3GA0016351 | chr5:57889765 | 0.321036 | 2.59E-05 | MGP |
| SMCO3 | ||||
| H2AJ | ||||
| ARHGDIB | ||||
| ERP27 | ||||
| ART4 | ||||
| ENSSSCG00000000611 | ||||
| RERG | ||||
| PLBD1 | ||||
| ATF7IP | ||||
| WU_10.2_5_111419379 | chr5:2378170 | 0.264446 | 2.65E-05 | ENSSSCG00000034275 |
| CERK | ||||
| TBC1D22A | ||||
| GRAMD4 |