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. 2023 Jan 19;14:303. doi: 10.1038/s41467-023-35813-9

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 5 — Time-scaled Bayesian maximum clade credibility tree for 58 samples in sublineage 4.4.1.1. Branch lengths are in years and grey bars indicate 95% high posterior density estimates of node date. The heatmap to the right of the phylogeny indicates patient incarceration status at the time of TB notification, ahpC mutation frequency within an individual’s infection, and the occurrence of a rifampicin resistance-conferring mutation (rpoB His445Leu). Source data are provided as a Source Data file.