Subject	Omics: Genomics
Specific subject area	Genomics, Forest ecosystem, Environmental science
Type of data	Tables, Figure
How the data were acquired	The data were acquired using the Illumina NovaSeq 6000 (San Diego, USA) sequencer and assembled with SPAdes v. 3.13.0
Data format	Raw data (fastq) and analyzed data (fasta)
Description of data collection	The fresh leaves of J. seravschanica were collected from the Turkistan region of Southern Kazakhstan and desiccated in silica gel. Total DNA was isolated from the leaves using the CTAB protocol [1]. The concentration and quality of the extracted DNA were checked by gel electrophoresis in agarose and Nanodrop 2000 spectrophotometry (Thermo Fisher Scientific, Wilmington, DE, USA). Paired-end sequencing was performed using NovaSeq 6000 platform (Illumina, San Diego, CA, USA).
Data source location	•Institution: Institute of Plant Biology and Biotechnology •City/Town/Region: Almaty •Country: Kazakhstan GPS coordinates for collected sample: 42.331250 N, 70.372583 E, altitude 1605 m.
Data accessibility	Repository name: National Center for Biotechnology Information Raw data are available in the Sequence Read Archive (SRA) under BioProject PRJNA883033 with SRA number SRR21673293. The complete chloroplast genome is available under accession number OL684343 Direct URL to data: https://www.ncbi.nlm.nih.gov/sra/PRJNA883033 (SRA) https://www.ncbi.nlm.nih.gov/nuccore/OL684343 (Nucleotide)