Table 4.
Virulence Profile.
| Capsule | RcsAB | rmpA2 | LPS | efflux pump | Type I fimbrie | Type III fibrie | Yersiniabactin | Aerobactin | Entbactine | SalmochelineT6SS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Year | MLST | wzi | K-locus | O-locus | galF | rcsA | rcsB | rmpA2 | gls | kfoC | wbbM | wbbN | wbbO | wzm | wzt | arcAB | fimA | fimB | fimC | fimD | fimE | fimF | fimG | fimH | fimI | fimK | mrkA | mrkB | mrkC | mrkD | mrkF | mrkH | mrkI | mrkJ | ybtP | ybtQ | fyuA | irp1 | irp2 | ybtE | ybtS | ybtT | ybtU | ybtX | ybtA | iucA | iucB | iucC | iucD | iutA | entA | entB | entC | entD | entE | entF | fepA | fepB | fepC | fepD | fepGfes | ybdA | iroE | tssF | tssG | scin/tssJ | clpV/tssH | dotU/tssL | hcp/tssD | icmF/tssM | impA/tssA | KPHS_23120 | tle1 | tli1 | vasE/tssK | vgrG/tssI | vipA/tssB | vipB/tssC | ||
| 1CT | 2020 | ST101 | 137 | K17 | O1/O2v1 | 1 | 1 | 0 | 1 | 0 | 0 | 1 | 1 | mrkB | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | |||||||||||||||||||||||||||||||||||
| 2CT | 2020 | ST101 | 137 | K17 | O1/O2v1 | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | ||||||||||||||||||||||||||||||||||||
| 3CT | 2020 | ST101 | 137 | K17 | O1/O2v1 | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | ||||||||||||||||||||||||||||||||||||
| 4CT | 2021 | ST101 | 137 | K17 | O1/O2v1 | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | ||||||||||||||||||||||||||||||||||||
| 5CT | 2021 | ST101 | 137 | K17 | O1/O2v1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |||||||||||||||||||||||||||||||||||
| 1CZ | 2020 | ST307 | 173 | K102 | O1/O2v2 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | ||||||||||||||||||||||||||||||||||||
| 2CZ | 2020 | ST512 | 154 | K107 | O1/O2v2 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | ||||||||||||||||||||||||||||||||||||
| 3CZ | 2020 | ST512 | 154 | K107 | O1/O2v2 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | ||||||||||||||||||||||||||||||||||||
| 4CZ | 2020 | ST307 | 173 | K102 | O1/O2v2 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | ||||||||||||||||||||||||||||||||||||
| 5CZ | 2020 | ST512 | 154 | K107 | O1/O2v2 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | ||||||||||||||||||||||||||||||||||||
| 6CZ | 2020 | ST512 | 154 | K107 | O1/O2v2 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | ||||||||||||||||||||||||||||||||||||
| 7CZ | 2020 | ST512 | 154 | K107 | O1/O2v2 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | ||||||||||||||||||||||||||||||||||||
| 8CZ | 2020 | ST512 | 154 | K107 | O1/O2v2 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | ||||||||||||||||||||||||||||||||||||
| 9CZ | 2020 | ST512 | 154 | K107 | O1/O2v2 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | ||||||||||||||||||||||||||||||||||||
| 10CZ | 2020 | ST101 | 137 | K17 | O1/O2v1 | 1 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | ||||||||||||||||||||||||||||||||||||
| 12CZ | 2021 | ST307 | 173 | K102 | O1/O2v2 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | ||||||||||||||||||||||||||||||||||||
The presence of virulence genes were reported as coloured square:
- Gene associated to capsule:
capsule production;
rcsAB - regulation of capsule sintesys and rmpA2 – regulation of mucoid phenotype; 
LPS;
efflux pump;
- Gene associated to fibrie:
type I;
type III.
- Gene associated to syderophores:
Yersiniabactin (Iron carrier, growth and replication of bacteria);
Aerobactin (Iron carrier, growth and replication of bacteria, highly virulet pneumoniae);
Enterobactine (Iron carrier, growth and replication of bacteria);
Salmocheline.
- Gene associeted to secretion system:
T6SS (type VI Secretion System).