Table 1.

Overview of evaluated antibody data sets. For each data set, we provided the name of the data set, the ID, the mass instrument, the ionization type, the fragment ion resolution in FWHM, a reference and the number of proteolytic enzymes in the data set

Data set name	Database ID	Mass instrument	Ionization type	Resolution	Ref.	Enzymes
IgG1-Human	MSV000079801	LTQ Orbitrap	HCD	17 500	[27]	Trypsin, chymotrypsin, asp-N, lys-C, glu-C, proteinase K
WIgG1-Mouse	MSV000079801	LTQ Orbitrap	HCD	17 500	[27]	Trypsin, asp-N, chymotrypsin
Herceptin	PXD023419	Orbitrap Fusion	Stepped HCD and EThcD	30 000	[12]	Trypsin, thermolysin, lys-N, lys-C, glu-C, asp-N, aLP, chymotrypsin, elastase