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. 2023 Jan 8;24(1):bbac529. doi: 10.1093/bib/bbac529

Figure 4.

Figure 4

Comparison of top 10 up-regulated hallmark gene sets using GSEA with input pre-ranked gene lists from the combinations of different reference genome databases (Ensembl, GENCODE and UCSC) and DE analysis methods (edgeR and DESeq2), along with the latest reference genome (mm39). The solid line indicates a hallmark gene set and the rank is based on the NES.