Table 1.
Performance using inputs generated by different biophysical models to predict mRNA degradation in the OpenVaccine dataset
| Package | Public MCRMSE | Private MCRMSE | Public MCRMSE semi-supervised | Private MCRMSE semi-supervised |
|---|---|---|---|---|
| RNAsoft | 0.23154 | 0.34521 | 0.23101 | 0.33841 |
| rnastructure | 0.23637 | 0.34639 | 0.23502 | 0.33989 |
| EternaFold | 0.23158 | 0.34613 | 0.23081 | 0.33878 |
| Contrafold_2 | 0.23245 | 0.34858 | 0.23123 | 0.34111 |
| NUPACK | 0.23679 | 0.34955 | 0.23587 | 0.34292 |
| Vienna | 0.23492 | 0.34515 | 0.2337 | 0.33864 |
| avg of all | 0.22976 | 0.34375 | 0.22914 | 0.33722 |