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. 2022 Dec 6;24(1):bbac516. doi: 10.1093/bib/bbac516

Figure 1.

Figure 1

An overview of the csDEG detection experiment. Patient’s samples are taken from biopsies and sequenced. Cell type compositions can be estimated by reference-free or reference-based deconvolution methods. With cell type proportions, bulk RNA-seq data, and samples’ information as inputs, csDEG detection can be performed using several computational methods listed in the green box.