Table 1.
Codon positions under positive selection detected by the site model using FUBAR and MEME using genes trees.
| Gene | Site model | Branch-site model | ||
|---|---|---|---|---|
| FUBAR | MEME | codeML | aBSREL | |
| GHSR | 211 (0.93) | 243(0.03); 249(0.04) | 211 (0.984) | 0;34% |
| IGF2 | 0 | 0 | 0 | 0 |
| IGFBP2 | 0 | 0 | 0 | 0 |
| IGFBP7 | 0 | 0 | 278 (0.974) | |
| EGF | 0 | 0 | 0 | 0 |
| LCORL | 0 | 0 | 0 | 0 |
| PLAG1 | 0 | 0 | 0 | 0 |
| ZFAT | 0 | 0 | 0 | 0 |
| NCPAG | 348 (0.91), 373 (0.95); 464 (0.95), 466 (0.94), 630 (0.97); 885 (0.93); 906 (0.95); 908 (0.94); 925 (0.92); 940 (0.93); 953 (0.94); 969 (0.92); 991 (0.93) | 241 (0.03); 466 (0.03); 885 (0.04) | 134 (0.953); 353 (0.950) | 0 |
Significance was assessed by Posterior Probability (PP) > 90% in FUBAR and p value < 0.05 in MEME. Detection of the position of codons under positive selection was carried out through the branch-site model using codeML and aBSREL. Significance is obtained through BEB (Posterior Probability (PP) > 0.90) for codeML and p-value < 0.05 in aBSREL.