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Summary and annotation of SNPs.
| Category | Number of SNPs | Percentage of total (%) | |
|---|---|---|---|
| Upstream | 1,17,141 | 0.62 | |
| Exonic | Stop gain | 236 | 0.0013 |
| Stop loss | 40 | 0.00021 | |
| Synonymous | 46,749 | 0.25 | |
| Non-synonymous | 29,550 | 0.16 | |
| Intronic | 56,12,654 | 29.86 | |
| Splicing | 290 | 0.0015 | |
| Downstream | 1,23,076 | 0.66 | |
| Upstream/Downstream | 3,906 | 0.02 | |
| Intergenic | 1,24,14,709 | 66.05 | |
| ts | 1,31,65,437 | ||
| tv | 56,30,367 | ||
| ts/tv | 2.338 | ||
| Total | 1,87,95,804 |
