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Benchmarking the structural variant (SV) calling results
| HG002 SVs (high-confidence tier 1 SV set) | ||||||
|---|---|---|---|---|---|---|
| Tool | TP (#) | FP (#) | FN (#) | Precision | Recall | F 1 |
| BLEND | 9229 | 855 | 412 | 0.9152 | 0.9573 | 0.9358 |
| minimap2 | 9222 | 915 | 419 | 0.9097 | 0.9565 | 0.9326 |
| LRA | 9155 | 830 | 486 | 0.9169 | 0.9496 | 0.9329 |
| Winnowmap2 | 9170 | 1029 | 471 | 0.8991 | 0.9511 | 0.9244 |
Best results are highlighted with bold text.
