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. 2023 Jan 6;12:1068000. doi: 10.3389/fcimb.2022.1068000

Table 4.

Primer sets used for PCR analysis of Tenacibaculum species loci proposed in the MLST.

Locus Primer Sequences (5′–3′) Amplicon length (bp) Reference
Forward Reverse
atpA ATTGGWGAYCGTCAAACWGG CCAAAYTTAGCRAAHGCTTC 567 Habib et al. (2014)
atpD TGGYCCAGTWATCGATGTTGA AATACGYTCTTGCATTGCTC 807 Småge et al. (2016a)
dnaK GGWACYACNAAYTCDTGTGT TCWATCTTMGCTTTYTCAGC 573 Habib et al. (2014)
fusA ATGGTAACTCACCCATTCCAGA TGGCATGATGCAACACAAGG 767 Småge et al. (2016a)
glyA CAYTTAACWCAYGGWTCDCC ACCATRTTTTTRTTTACHGT 558 Habib et al. (2014)
gyrB AGTATYCARGCRCTRGAAGG GTWCCTCCTTCRTGYGTRTT 597 Habib et al. (2014)
ileS CCWACHTTTGGWGCHGAYGA GAATCRAACCAWACATCAAT 542 Habib et al. (2014)
infB ATGCCDCAAACWAAAGARGC GTAATHGCTCCAACYCCTTT 564 Habib et al. (2014)
pgk GCTCCWCCACCWGTAGAAAC GCTCCWCCACCWGTAGAAAC 935 Småge et al. (2016a)
rlmN GCKTGTGTDTCDAGYCARGT CCRCADGCDGCATCWATRTC 549 Habib et al. (2014)
rpoB ATYTCTCCAAAACGCTGACC AAAACGAATCAAGGWACGAAYA 3266 Småge et al. (2016a)
ACCCTTTCCAAGGCATAAAGG GAGCCATYGGTTTTGAAAGAGA
GAGCCATYGGTTTTGAAAGAGA GAGCCATYGGTTTTGAAAGAGA
tgt GAAACWCCWATWTTYATGCC TAYAWYTCTTCNGCWGGTTC 486 Habib et al. (2014)
trpB GTWGCNCGWATGAAAATGYT CCWGGRTARTCYAATCCTGC 368 Habib et al. (2014)
tuf AGAGAWTTATTRTCTTTCTA GTTACCTGACCWGCWCCWAC 554 Habib et al. (2014)
ACCTCCTTCACGGATAGC TTACGATCGTTCGAAGCCCC 971 Småge et al. (2016a)
yqfO GCBGAARRTTTTGAYAAYGT AYTTCRTARGCDACYTCTTC 446 Habib et al. (2014)