Table 4.
Primer sets used for PCR analysis of Tenacibaculum species loci proposed in the MLST.
Locus | Primer Sequences (5′–3′) | Amplicon length (bp) | Reference | |
---|---|---|---|---|
Forward | Reverse | |||
atpA | ATTGGWGAYCGTCAAACWGG | CCAAAYTTAGCRAAHGCTTC | 567 | Habib et al. (2014) |
atpD | TGGYCCAGTWATCGATGTTGA | AATACGYTCTTGCATTGCTC | 807 | Småge et al. (2016a) |
dnaK | GGWACYACNAAYTCDTGTGT | TCWATCTTMGCTTTYTCAGC | 573 | Habib et al. (2014) |
fusA | ATGGTAACTCACCCATTCCAGA | TGGCATGATGCAACACAAGG | 767 | Småge et al. (2016a) |
glyA | CAYTTAACWCAYGGWTCDCC | ACCATRTTTTTRTTTACHGT | 558 | Habib et al. (2014) |
gyrB | AGTATYCARGCRCTRGAAGG | GTWCCTCCTTCRTGYGTRTT | 597 | Habib et al. (2014) |
ileS | CCWACHTTTGGWGCHGAYGA | GAATCRAACCAWACATCAAT | 542 | Habib et al. (2014) |
infB | ATGCCDCAAACWAAAGARGC | GTAATHGCTCCAACYCCTTT | 564 | Habib et al. (2014) |
pgk | GCTCCWCCACCWGTAGAAAC | GCTCCWCCACCWGTAGAAAC | 935 | Småge et al. (2016a) |
rlmN | GCKTGTGTDTCDAGYCARGT | CCRCADGCDGCATCWATRTC | 549 | Habib et al. (2014) |
rpoB | ATYTCTCCAAAACGCTGACC | AAAACGAATCAAGGWACGAAYA | 3266 | Småge et al. (2016a) |
ACCCTTTCCAAGGCATAAAGG | GAGCCATYGGTTTTGAAAGAGA | |||
GAGCCATYGGTTTTGAAAGAGA | GAGCCATYGGTTTTGAAAGAGA | |||
tgt | GAAACWCCWATWTTYATGCC | TAYAWYTCTTCNGCWGGTTC | 486 | Habib et al. (2014) |
trpB | GTWGCNCGWATGAAAATGYT | CCWGGRTARTCYAATCCTGC | 368 | Habib et al. (2014) |
tuf | AGAGAWTTATTRTCTTTCTA | GTTACCTGACCWGCWCCWAC | 554 | Habib et al. (2014) |
ACCTCCTTCACGGATAGC | TTACGATCGTTCGAAGCCCC | 971 | Småge et al. (2016a) | |
yqfO | GCBGAARRTTTTGAYAAYGT | AYTTCRTARGCDACYTCTTC | 446 | Habib et al. (2014) |