Table 3.
Isolate Code | ST | CRISPR-Cas | ||||
---|---|---|---|---|---|---|
Region | Element | No. of Spacer | No. of cas Gene (Cas Type) | Direct Repeat (DR) Consensus/cas Gene | ||
PA01 | 647 | 1 | CRISPR | 13 | TTTCTTAGCTGCCTATACGGCAGTGAAC | |
2 | CRISPR | 11 | GTTCACTGCCGTATAGGCAGCTAAGAAA | |||
3 | Cas cluster | 6 (IF) | cas6, csy3, csy2, csy1, cas3-cas2, cas1 | |||
4 | CRISPR | 7 | TTTCTTAGCTGCCTACACGGCAGTGAAC | |||
PA02 | 3910 * | 1 | CRISPR | 10 | GTTCACTGCCGTGTAGGCAGCTAAGAAA | |
2 | Cas cluster | 6 (IF) | cas1, cas3-cas2, csy1, csy2, csy3, cas6 | |||
3 | CRISPR | 4 | TTTCTTAGCTGCCTATACGGCAGTGAAC | |||
4 | CRISPR | 7 | TTTCTTAGCTGCCTATACGGCAGTGAAC | |||
5 | CRISPR | 27 | CGGTTCATCCCCACGCATGTGGGGAACAC | |||
6 | Cas cluster | 8 (IE) | cas2, cas1, cas6, cas5, cas7, cse2, cse1, cas3 | |||
7 | CRISPR | 4 | CGGTTCATCCCCACACCCGTGGGGAACAC | |||
8 | CRISPR | 4 | TTTCTTAGCTGCCTATACGGCAGTGAAC | |||
9 | CRISPR | 6 | TTTCTTAGCTGCCTACACGGCAGTGAAC | |||
10 | CRISPR | 10 | GTTCACTGCCGTGTAGGCAGCTAAGAAA | |||
11 | CRISPR | 5 | TTTCTTAGCTGCCTATACGGCAGTGAAC | |||
PA03 | 980 | 1 | CRISPR | 22 | GTTCACTGCCGTATAGGCAGCTAAGAAA | |
2 | CRISPR | 11 | GTTCACTGCCGTGTAGGCAGCTAAGAAA | |||
3 | Cas cluster | 6 (IF) | cas1, cas3-cas2, csy1, csy2, csy3, cas6 | |||
4 | CRISPR | 13 | TTTCTTAGCTGCCTATACGGCAGTGAAC | |||
PA04 | 1097 | 1 | CRISPR | 19 | GTTCACTGCCGTGTAGGCAGCTAAGAAA | |
2 | Cas cluster | 6 (IF) | cas1, cas3-cas2, csy1, csy2, csy3, cas6 | |||
3 | CRISPR | 22 | TTTCTTAGCTGCCTATACGGCAGTGAAC | |||
PA05 | 1240 | 1 | CRISPR | 7 | GTTCACTGCCGTATAGGCAGCTAAGAAA | |
2 | Cas cluster | 6 (IF) | cas6, csy3, csy2, csy1, cas3-cas2, cas1 | |||
3 | CRISPR | 14 | TTTCTTAGCTGCCTACACGGCAGTGAAC | |||
PA06 | 1197 | ND | ND | ND | ND | |
PA07 | 532 | 1 | CRISPR | 11 | GTGTTCCCCACGGGTGTGGGGATGAACCG | |
2 | Cas cluster | 8 (IE) | cas3, cse1, cse2, cas7, cas5, cas6, cas1, cas2 | |||
3 | CRISPR | 12 | GTGTTCCCCACATGCGTGGGGATGAACCG | |||
PA08 | 270 | ND | ND | ND | ND | |
PA09 | 500 | ND | ND | ND | ND | |
PA10 | 266 | 1 | CRISPR | 9 | TTTCTTAGCTGCCTATACGGCAGTGAAC | |
PA11 | 313 | ND | ND | ND | ND | |
PA13 | 162 | ND | ND | ND | ND | |
PA14 | 162 | ND | ND | ND | ND |
ND, not detected. * Novel ST.