| AP-# | Adaptor Protein # |
| ARF | ADP ribosylation factor |
| β-HEXA | β-hexosaminidase A |
| Ca2+ | Calcium |
| CLEAR | Coordinated lysosomal expression and regulation element |
| DD | Danon Disease |
| EE | Early endosomes |
| EL | Endolysosomes |
| ER | Endoplasmic reticulum |
| FGE | Formylglycine-generating enzyme |
| FLCN | Folliculin |
| FNIP | Folliculin-interacting proteins |
| GATOR1 | GTPase-activating protein (GAP) for RAG A |
| GCase | Glucocerebrosidase |
| GD | Gaucher Disease |
| GGA | Golgi-localized, γ ear–containing, ARF–binding protein |
| GlcCer | Glucosylceramide |
| GM2 | Ganglioside monosialic 2 |
| GM2A | GM2 ganglioside activator protein |
| GTPase | GTP (guanosine triphosphate)-binding proteins |
| HOPS | Homotypic fusion and vacuole protein sorting |
| ILVs | Intraluminal vesicles |
| LAMP# | Lysosomal-associated membrane protein # |
| LD | Lysosomal Disease |
| LIMP-# | Lysosomal integral membrane protein- # |
| LMP | Lysosomal membrane proteins |
| LRO | Lysosome-related organelles |
| LRP | Lipoprotein receptor-related protein |
| LYCHOS | Lysosomal cholesterol sensing protein (G protein–coupled receptor 155) |
| M6P | Mannose 6-phosphate |
| M6PR | Mannose-6-phosphate receptors |
| MCOLN1 | Mucolipin TRP Cation Channel 1; protein coding gene |
| MITF | Microphthalmia-associated transcription factor |
| MiT-TEF | Family of transcriptions factors |
| ML1 | Mucolipin-1 |
| ML IV | Mucolipidosis type IV |
| MSD | Multiple sulphatase deficiency |
| mTOR | Mammalian target of rapamycin |
| mTORC # | Mammalian target of rapamycin complex # |
| NPC1 | Niemann–Pick type C1 protein |
| NSF | N-ethyl-maleimide-sensitive factor |
| PSAP | Gene that encodes prosaposin |
| RER | Rough Endoplasmic Reticulum |
| Sap C | Saposin C |
| SNARE | Soluble N-ethylmaleimide-sensitive factor-attachment protein receptor |
| SUMF1 | Sulphatase Modifying Factor 1 |
| TFE3 | Transcription factor E3 |
| TFEB | Transcription factor EB |
| TFEC | Transcription Factor EC |
| TGN | Trans-Golgi network |
| TPC | Two-pore channel |
| TRP | Transient receptor potential |
| TRPML | Transient receptor potential of the mucolipin family |
| TRPML1 | Transient receptor potential of mucolipin 1 |
| TSC | Tuberous sclerosis complex |
| TSE | Tubular sorting endosome |
| UCE | Uncovering Enzyme |
| UDP-GlcNac | Uridine diphosphate N-acetylglucosamine |
| ULK1 | Unc-51- like kinase 1 |
| VSE | Vacuolar sorting endosome |