FIGURE 2.

Neighbor‐joining tree based on the maximum composite likelihood distance that shows clustering of isolates from rats and other reference isolates. Antimicrobial genes recovered from isolates are noted. Isolates from rats are designated with “rat” and a sample number, while other isolates are denoted with the respective GenBank accession numbers, with the exception of reference genome NC_007795.1, used in mapping and assembling. Bootstrap values above 50% are shown as numbers at respective nodes