Software and algorithms |
|
SEGSA_DTA |
This paper |
https://github.com/koyurion/SEGSA_DTA |
DeepDTAF |
(Wang et al., 2021)1
|
https://github.com/KailiWang1/DeepDTAF |
GraphDTA |
(Nguyen et al., 2021)9
|
https://github.com/thinng/GraphDTA |
Pafnucy |
(Stepniewska-Dziubinska et al., 2018)7
|
https://gitlab.com/cheminfIBB/pafnucy |
LeDock |
(Zhang and Zhao, 2016)28
|
http://www.lephar.com/software.htm |
Glide |
(Friesner et al., 2006)27
|
https://www.schrodinger.com/glide |
PLIP |
(Salentin et al., 2015)45
|
https://github.com/pharmai/plip |
Rosetta |
(Fleishman et al., 2011)46
|
https://rosettacommons.org/ |
SHAP |
(Lundberg and Lee, 2017)37
|
https://github.com/slundberg/shap |
|
Other |
|
Database: AAindex |
(Kawashima et al., 2008)43
|
https://www.genome.jp/aaindex/ |
Database: PDBbind |
(Wang et al., 2005)49
|
Version 2019; http://www.pdbbind.org.cn/
|
Database: RCSB Protein Data Bank |
(Burley et al., 2021)51
|
https://www.rcsb.org/ |
Database: DUD-E |
(Mysinger et al., 2012)29
|
http://dude.docking.org/ |
Database: DrugBank |
(Wishart et al., 2018)31
|
https://go.drugbank.com/ |