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. 2022 Dec 28;26(1):105892. doi: 10.1016/j.isci.2022.105892
REAGENT or RESOURCE SOURCE IDENTIFIER
Software and algorithms

SEGSA_DTA This paper https://github.com/koyurion/SEGSA_DTA
DeepDTAF (Wang et al., 2021)1 https://github.com/KailiWang1/DeepDTAF
GraphDTA (Nguyen et al., 2021)9 https://github.com/thinng/GraphDTA
Pafnucy (Stepniewska-Dziubinska et al., 2018)7 https://gitlab.com/cheminfIBB/pafnucy
LeDock (Zhang and Zhao, 2016)28 http://www.lephar.com/software.htm
Glide (Friesner et al., 2006)27 https://www.schrodinger.com/glide
PLIP (Salentin et al., 2015)45 https://github.com/pharmai/plip
Rosetta (Fleishman et al., 2011)46 https://rosettacommons.org/
SHAP (Lundberg and Lee, 2017)37 https://github.com/slundberg/shap

Other

Database: AAindex (Kawashima et al., 2008)43 https://www.genome.jp/aaindex/
Database: PDBbind (Wang et al., 2005)49 Version 2019; http://www.pdbbind.org.cn/
Database: RCSB Protein Data Bank (Burley et al., 2021)51 https://www.rcsb.org/
Database: DUD-E (Mysinger et al., 2012)29 http://dude.docking.org/
Database: DrugBank (Wishart et al., 2018)31 https://go.drugbank.com/