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. 2023 Jan 20;23:39. doi: 10.1186/s12879-022-07977-0

Table 7.

Predicted presence (P) or absence (A) of certain virulence genes among 255 S. aureus isolates

Number of isolates and corresponding FASTQ files Virulence gene of interest Predicted genotype by 1928 platform and INH Discordant across methods (n [%])
AAa PPb AP PA
255 etA 251 2 0 2 2 [0.8]
255 etB 253 0 0 2 2 [0.8]
255 lukF-PVL 248 7 0 0 0 [0]
255 lukS-PVL 248 7 0 0 0 [0]
255 tsst1 215 36 0 4 4 [1.6]

Total

(% of 1275)

1215

(95.3)

52

(4.1)

0

(0.0)

8

(6.3)

8

(6.3)

aA absence, bP presence