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. 2023 Jan 20;11:10. doi: 10.1186/s40168-022-01453-2

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© The Author(s) 2023

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 1 — Region-specific distribution of distinct microbial populations from the proximal to distal gastrointestinal tract (GIT) of dairy cattle in the forage-based (F) and grain-based (G) diets, respectively. a Principal coordinate analysis (PCoA) profile among the 10 GIT regions. Alpha diversity (b richness index) and beta diversity (c Bray–Curtis) across the GIT regions. d Relative abundance (%) of dominant phyla, including the bacterial, archaeal, and eukaryotic (e) communities from the proximal to distal GIT. f Relative abundance of major genera across the GIT regions belonging to bacteria, archaea, and eukaryotes. C, Candidatus. Only the dominant phyla or genera with a mean relative abundance greater than 1% at one site were listed. RUM, rumen; RET, reticulum; OMA, omasum; ABO, abomasum; DUO, duodenum; JEJ, jejunum; ILE, ileum; CEC, cecum; COL, colon; REC, rectum