Table 3.

Only DEGs were significantly rewired between control and infected iCells. For each cell line and the patient data (column 1), we computed the average rewiring of VHIs (column 2), DEGs (column 3) and background genes (column 4). We compare the rewiring of the VHIs and the DEGs with the background genes, and the entries are statistically significant are in bold (the corresponding p-value of the Mann–Whitney test is in parentheses).

Cell Line	Rewirement of VHIs	Rewirement of DEGs	Rewirement of Background Genes
A549	0.037	0.064 (p value $<0.01$)	0.044
NHBE	0.038	0.063 (p value $<0.01$)	0.043
CALU	0.053	0.072 (p value $<0.01$)	0.057
Patient	0.073	0.088 (p value $<0.01$)	0.085