Table 7.
Overview of the SNP differences between animals and owners within the household, animals within the household as well as in the other households, and animals and other human sequences in GISAID. Pairwise distance is measured as the number of sites that differ between the two sequences. Missing positions are ignored.
| Household ID | Sample from | Minimum Distance (SNPs) to Sequence from Animal in the Household | Minimum Distance (SNPs) to Sequence from Owner in the Household | Most Similar Sequence from Owner in the Household | Minimum Distance (SNPs) to Sequence from Animal in Another Household | Most Similar Sequence from Animal in Another Household | Minimum Distance (SNPs) to Another Swiss Sequence |
|---|---|---|---|---|---|---|---|
| USZ22 | Dog 22.1 Cat 22.2 |
1 1 |
0 1 |
Owners 1, 2, 4 Owners 1, 2, 4 |
13 14 |
Cat 38.2 Cat 38.2 |
0 1 |
| USZ29 | Dog 29.1 | - | 0 | Owner 1 | 15 | Dog 22.1 | 0 |
| USZ39 | Cat 39.1 Cat 39.2 |
2 2 |
0 1 |
Owner 1 Owners 3, 4 |
18 17 |
Dog 22.1 and cat 22.2 Dog 22.1 and cat 22.2 |
1 1 |
| USZ38 | Cat 38.2 | - | 3 | Owner 1 | 13 | Dog 22.1 | 2 |
| USZ36 | Cat 36.1 | - | 0 | Owners 1, 2 | 16 | Dog 22.1 and cat 22.2 | 0 |