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. 2023 Jan 4;28(2):474. doi: 10.3390/molecules28020474

Figure 2.

Figure 2

Root-mean-square deviation (RMSD) of the MD simulation of HIV-1 gp120 monomer using GROMACS. A plot of RMSD in nanometers (nm) against time in nanoseconds (ns). The RMSD increased from 0 ns to 1 ns and fluctuated till 9 ns, after which it stabilized till the end of the simulation.