Table 2.
The unfolding volumes and temperatures of DNA GQs, and the corresponding experi-mental conditions.
Name | Cation | Cation Conc. | ΔV (cm3/mol) |
Tm at 1bar (°C) | Oligomer Conc. (μM) | N | Topology | pH | Buffer | Ref |
---|---|---|---|---|---|---|---|---|---|---|
TBA | K+ | 100 mM | −54.6 ± 4.2 | 52.6 ± 3.4 | 40 | 15 | AP | - | TRIS 30 mM | [26] |
Htel22 | Na+ | 100 mM | −38.4 ± 10.1 | 54.6 ± 0.9 | 20 | 22 | AP | 7.4 | TRIS 10 mM | [66] |
Htel22 | Na+ | 2 0mM | −68 ± 2 1 | 39.6 ± 0.7 1 | 10–300 4 | 22 | AP | 7.0 | Na phosph 10mM | [46] |
Htel22 | Na+ | 50 mM | −60 ± 2 1 | 47.9 ± 0.7 1 | 10–300 4 | 22 | AP | 7.0 | Na phosph 10mM | [46] |
Htel22 | Na+ | 100 mM | −56 ± 2 1 | 54.9 ± 0.6 1 | 10–300 4 | 22 | AP | 7.0 | Na phosph 10mM | [46] |
Htel22 | K+ | 100 mM | −42.7 ± 6.7 | 64.6 ± 2.2 | 20 | 22 | H | 7.4 | Tris 10 mM | [66] |
c-MYC | K+ | 170 mM | −16.9 ± 1.8 | 83.4 ± 1.3 | 2 | 22 | P | 7.4 | K-phosph 100 mM | [62] |
KIT | K+ | 170 mM | −6.2 ± 0.9 | 58.5 ± 0.4 | 2 | 22 | P | 7.4 | K-phosph 100 mM | [62] |
VEGF | K+ | 170 mM | −18.1 ± 4.6 | 78.8 ± 1.1 | 2 | 24 | P | 7.4 | K-phosph 100 mM | [62] |
Htel26 | K+ | 20 mM | −69 ± 7 2 | NA | 300 | 26 | H | 7.0 | tetrabutylammonium phosphate |
[63] |
c-MYC | K+ | 0.1 mM | −30 ± 4 | 59.1 | 25 | 22 | P | 7.0 | Cs-phosp 10 mM | [67] |
HepB1 | K+ | 140 mM | 17.8 ± 3.8 | NA | 1 | 27 | NA | 7.4 3 | K-phosp/TRIS | [14] |
HepB1 | K+ | 100 mM | 16.1 ± 2.0 | 53.8 | 2400 | 27 | NA | 7.4 | Bis-TRIS 100 mM | [14] |
HepB2 | K+ | 140 mM | −3.7 ± 0.6 | 51.9 | 1 | 25 | NA | 7.4 3 | K-phosp/TRIS | [14] |
HepB3 | K+ | 140 mM | 2.0 ± 1.1 | 41.4 | 1 | 23 | NA | 7.4 3 | K-phosp/TRIS | [14] |
TBA (+PEG) | K+ | 100 mM | −13.1 ± 1.0 | 60.6 ± 3.2 | 40 | 15 | AP | 7.0 | TRIS 30 mM | [26] |
Htel22 | K+ | 170 mM | −19 ± 3 | 63 | 10 | 21 | H | 7.4 | K-phosph 100 mM | [51] |
Htel22 | K+ | 200 mM | 6.4 ± 1 | NA | 9400 | 21 | P? | 7.4 | Bis-TRIS 200 mM | [51] |
TG4T | Na+ | 1 M | 1.5 ± 2.3 | 68.9 | 100 | 4 × 7 | P | 7.5 | TRIS 10 mM | [65] |
Pu22T12T13 | K+ | 2 mM | −38 ± 10 | 71.8 | 100 | 22 | P | 7.0 | tetrabutylammonium phosphate |
[65] |
1 Weighted average of the published values obtained from different experimental techniques. 2 K+ induced volume change at 25 °C. 3 Ph7.4 K-phosphate buffer was used for determination of the Tm at atmospheric pressure, the pH dependence was ruled out by a 3D fitting. 4 Depending on the used experimental techniques.