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. 2023 Jan 22;15:10. doi: 10.1186/s13321-022-00677-6

Table 1.

Run times of the isomer enumerator for alkane isomers

Molecule nconsti nspatial tconsti [s] tspatial [s]
No output SMILES No output SMILES
C1H4 1 1 < 0.01 < 0.01 < 0.01 < 0.01
C2H6 1 1 < 0.01 0.01 < 0.01 0.01
C3H8 1 1 < 0.01 < 0.01 < 0.01 < 0.01
C4H10 2 2 < 0.01 < 0.01 < 0.01 < 0.01
C5H12 3 3 < 0.01 0.01 < 0.01 < 0.01
C6H14 5 5 < 0.01 < 0.01 < 0.01 < 0.01
C7H16 9 11 < 0.01 < 0.01 < 0.01 < 0.01
C8H18 18 24 < 0.01 < 0.01 < 0.01 < 0.01
C9H20 35 55 < 0.01 < 0.01 < 0.01 < 0.01
C10H22 75 136 < 0.01 < 0.01 < 0.01 < 0.01
C11H24 159 345 < 0.01 0.01 < 0.01 0.01
C12H26 355 900 < 0.01 0.01 0.01 0.02
C13H28 802 2412 0.02 0.03 0.03 0.05
C14H30 1858 6563 0.05 0.07 0.08 0.11
C15H32 4347 18127 0.13 0.18 0.17 0.31
C16H34 10359 50699 0.31 0.40 0.48 0.70
C17H36 24894 143255 0.93 1.16 1.35 2.48
C18H38 60523 408429 2.74 3.17 4.02 9.86
C19H40 148284 1173770 8.22 9.37 11.70 28.48
C20H42 366319 3396844 25.55 33.87 35.33 99.87
C21Hv44 910726 9892302 79.41 104.05 107.88 280.27
C22H46 2278658 28972080 253.57 273.27 334.91 869.78
C23H48 5731580 85289390 834.42 927.93 1060.18 1338.33
C24H50 14490245 252260276 2895.93 2997.59 3649.41 4545.92
C25H52 36797588 749329719 10040.19 10455.26 11309.32 13179.80

The table shows the number nconsti of constitutional isomers and the number nspatial of spatial isomers of the straight-chain alkanes from C1H4 to C24H50, as well as the wall-clock time spent on their enumeration. The time tconsti is the wall-clock time in seconds needed to enumerate the constitutional isomers, and the time tspatial is the wall-clock time in seconds needed to enumerate the spatial isomers. The elapsed wall-clock time is reported both for the case when no output is generated as well as the case when the SMILES strings of the isomers are reported. All calculations were performed on AMD EPYC 7763 CPUs of the ETH Zürich Euler cluster [40] and averaged over five runs. The results are illustrated graphically in Fig. 14