Table 3.
Comparing three peptide regions (EPI, EPII, and EPIII in genotype 1) among seven reference genotypes of the HCV in the E2 glycoprotein
|
| |||
|---|---|---|---|
| Peptide region | Genotype | Accession number of ref seq | Residues |
|
| |||
| EPI | 1 | NC_004102 | QLINTNGSWHIN |
| 2 | NC_009823.1 | QLVNTNGSWHIN | |
| 3 | NC_009824.1 | QLVNTNGSWHIN | |
| 4 | NC_009825.1 | QLINSNGSWHIN | |
| 5 | NC_009826.1 | QFVNTNGSWHIN | |
| 6 | NC_009827.1 | QLINTNGSWHIN | |
| 7 | NC_030791.1 | QLINTNGSWHIN | |
| EPII | 1 | NC_004102 | NTGWLAGLFYQHK |
| 2 | NC_009823.1 | HTGFIASLFYTHS | |
| 3 | NC_009824.1 | NTGFIAGLFYYHK | |
| 4 | NC_009825.1 | NTGFLASLFYTHK | |
| 5 | NC_009826.1 | QTGFIAGlMYAHK | |
| 6 | NC_009827.1 | QTGFLSALFYRSN | |
| 7 | NC_030791.1 | QTGFLAALFYTHR | |
| EPIII | 1 | NC_004102 | GAPTYSWGANDTDVFVLN |
| 2 | NC_009823.1 | GAPTYTWGENETDVFLLN | |
| 3 | NC_009824.1 | GVPTYTWGENEKDVFLLK | |
| 4 | NC_009825.1 | GVPTYTWGENETDVFLLN | |
| 5 | NC_009826.1 | GCPTYNWGSNETDILLLN | |
| 6 | NC_009827.1 | GNPTYNWGENETDVFMLE | |
| 7 | NC_030791.1 | GVPTYTWGENESDVFXLN | |
|
| |||
Bold letter shows the substitutions.